Wall clock time and date at job start Mon Mar 30 2020 02:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.50263 * 2 1 4 4 C 1.53037 * 109.50096 * 239.92107 * 2 1 3 5 5 N 1.46850 * 109.52057 * 180.83597 * 4 2 1 6 6 C 1.46842 * 111.19549 * 61.74733 * 5 4 2 7 7 C 1.53039 * 109.52198 * 298.25442 * 6 5 4 8 8 O 1.42904 * 109.50489 * 299.19877 * 7 6 5 9 9 C 1.50706 * 109.50280 * 179.12475 * 7 6 5 10 10 H 1.08000 * 119.99302 * 239.99933 * 9 7 6 11 11 C 1.37871 * 120.00436 * 59.72466 * 9 7 6 12 12 N 1.31515 * 119.99684 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 120.00405 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47154 * 89.99418 * 13 11 9 15 15 H 1.48493 * 109.47010 * 209.99942 * 13 11 9 16 16 H 1.48502 * 109.46736 * 329.99638 * 13 11 9 17 17 C 1.53115 * 109.28141 * 59.18246 * 7 6 5 18 18 H 1.09001 * 109.47035 * 180.02562 * 1 2 3 19 19 H 1.08997 * 109.47229 * 300.07858 * 1 2 3 20 20 H 1.08997 * 109.47586 * 60.07717 * 1 2 3 21 21 H 1.09002 * 109.46355 * 60.82338 * 4 2 1 22 22 H 1.08994 * 109.45554 * 300.84991 * 4 2 1 23 23 H 1.00898 * 110.99877 * 297.64457 * 5 4 2 24 24 H 1.08996 * 109.46278 * 178.23996 * 6 5 4 25 25 H 1.08996 * 109.46668 * 58.26927 * 6 5 4 26 26 H 0.96704 * 113.99972 * 299.92508 * 8 7 6 27 27 H 0.97004 * 120.00247 * 180.02562 * 12 11 9 28 28 H 1.08995 * 109.52199 * 62.24717 * 17 7 6 29 29 H 1.09004 * 109.52673 * 182.44117 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0409 -0.7230 -1.2483 5 7 3.5092 -0.7408 -1.2387 6 6 4.0237 -1.4715 -0.0735 7 6 3.5720 -0.7709 1.2099 8 8 4.0919 0.5599 1.2353 9 6 4.0821 -1.5333 2.4056 10 1 3.3857 -1.9406 3.1235 11 6 5.4376 -1.7155 2.5800 12 7 6.2853 -1.2244 1.7027 13 14 6.0699 -2.6611 4.0618 14 1 6.1714 -4.1031 3.7222 15 1 7.4099 -2.1465 4.4423 16 1 5.1309 -2.4851 5.1987 17 6 2.0420 -0.7237 1.2485 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5150 0.8892 20 1 -0.3634 0.5126 -0.8906 21 1 1.6898 -0.2019 -2.1390 22 1 1.6653 -1.7462 -1.2545 23 1 3.8824 0.1961 -1.2717 24 1 5.1128 -1.4941 -0.1109 25 1 3.6388 -2.4912 -0.0853 26 1 5.0576 0.6054 1.2116 27 1 7.2390 -1.3529 1.8251 28 1 1.6467 -1.7392 1.2687 29 1 1.7165 -0.1872 2.1397 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401800588.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:59 Heat of formation + Delta-G solvation = -89.060403 kcal Electronic energy + Delta-G solvation = -12165.034701 eV Core-core repulsion = 10086.216403 eV Total energy + Delta-G solvation = -2078.818299 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.19375 -36.43173 -34.16353 -33.64535 -31.09913 -27.23392 -26.99923 -24.04006 -22.10060 -20.72627 -18.82477 -17.25183 -16.48453 -16.30544 -15.94460 -15.22926 -14.81593 -14.19794 -13.58398 -13.41566 -13.17025 -12.86537 -12.69433 -12.64033 -12.35908 -12.22705 -11.99620 -11.76758 -11.52986 -10.98447 -10.69894 -10.39413 -8.90406 -8.18691 -6.36831 1.38613 1.40844 1.50169 2.37524 3.01300 3.69963 3.94878 4.09570 4.13806 4.36866 4.63377 4.68824 4.77579 4.81341 4.95306 5.00276 5.18373 5.25002 5.34552 5.45564 5.52535 5.69960 5.89933 6.07144 6.34963 6.60709 6.75571 7.33392 7.45311 8.81457 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.062380 B = 0.013609 C = 0.012493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.754672 B = 2057.034250 C = 2240.669614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.121 4.121 3 H 0.055 0.945 4 C 0.064 3.936 5 N -0.690 5.690 6 C 0.049 3.951 7 C 0.208 3.792 8 O -0.596 6.596 9 C -0.566 4.566 10 H 0.047 0.953 11 C 0.030 3.970 12 N -0.911 5.911 13 Si 0.959 3.041 14 H -0.274 1.274 15 H -0.279 1.279 16 H -0.276 1.276 17 C -0.089 4.089 18 H 0.058 0.942 19 H 0.050 0.950 20 H 0.071 0.929 21 H 0.087 0.913 22 H 0.064 0.936 23 H 0.335 0.665 24 H 0.080 0.920 25 H 0.041 0.959 26 H 0.372 0.628 27 H 0.270 0.730 28 H 0.058 0.942 29 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.205 0.657 -3.309 7.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.141 4.141 3 H 0.073 0.927 4 C -0.065 4.065 5 N -0.317 5.317 6 C -0.081 4.081 7 C 0.167 3.833 8 O -0.404 6.404 9 C -0.605 4.605 10 H 0.065 0.935 11 C -0.170 4.170 12 N -0.551 5.551 13 Si 0.784 3.216 14 H -0.199 1.199 15 H -0.204 1.204 16 H -0.201 1.201 17 C -0.127 4.127 18 H 0.077 0.923 19 H 0.069 0.931 20 H 0.090 0.910 21 H 0.106 0.894 22 H 0.083 0.917 23 H 0.152 0.848 24 H 0.098 0.902 25 H 0.059 0.941 26 H 0.221 0.779 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.605 0.256 -3.777 7.613 hybrid contribution 1.034 -0.056 1.752 2.035 sum -5.571 0.200 -2.025 5.931 Atomic orbital electron populations 1.21715 0.93344 1.02102 1.02060 1.21783 0.97136 0.99237 0.95983 0.92674 1.22117 0.87775 1.00128 0.96518 1.60873 1.07705 1.21104 1.42010 1.22433 1.01336 0.95675 0.88661 1.19480 0.90399 0.80411 0.93010 1.86098 1.26519 1.30465 1.97298 1.22021 0.92677 1.35764 1.09993 0.93495 1.25676 0.96877 0.95651 0.98806 1.69667 1.03028 1.46351 1.36035 0.85554 0.77531 0.78879 0.79603 1.19913 1.20410 1.20142 1.21500 0.94751 0.99186 0.97223 0.92269 0.93099 0.91003 0.89441 0.91746 0.84803 0.90194 0.94086 0.77873 0.92052 0.92312 0.94338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 9.20 71.98 0.66 -3.00 15 2 C -0.12 -4.30 2.71 -10.74 -0.03 -4.33 15 3 H 0.05 2.13 7.80 -2.39 -0.02 2.11 15 4 C 0.06 2.20 5.84 86.33 0.50 2.70 15 5 N -0.69 -27.93 6.86 -514.02 -3.53 -31.46 15 6 C 0.05 2.34 5.29 86.33 0.46 2.80 15 7 C 0.21 10.38 0.68 -11.49 -0.01 10.38 15 8 O -0.60 -30.96 11.91 -148.98 -1.77 -32.74 15 9 C -0.57 -31.10 8.25 25.60 0.21 -30.89 15 10 H 0.05 2.60 7.74 -2.91 -0.02 2.58 15 11 C 0.03 1.60 5.22 84.65 0.44 2.04 15 12 N -0.91 -48.75 9.70 21.45 0.21 -48.55 15 13 Si 0.96 42.71 29.54 68.60 2.03 44.74 15 14 H -0.27 -11.88 7.11 99.48 0.71 -11.18 15 15 H -0.28 -12.08 7.11 99.48 0.71 -11.37 15 16 H -0.28 -12.32 7.11 99.48 0.71 -11.62 15 17 C -0.09 -3.86 4.24 30.67 0.13 -3.73 15 18 H 0.06 1.51 8.14 -2.39 -0.02 1.49 15 19 H 0.05 1.37 8.14 -2.39 -0.02 1.35 15 20 H 0.07 1.62 8.14 -2.39 -0.02 1.60 15 21 H 0.09 2.50 8.14 -2.39 -0.02 2.48 15 22 H 0.06 2.17 8.14 -2.39 -0.02 2.15 15 23 H 0.34 13.61 8.38 -89.70 -0.75 12.85 15 24 H 0.08 4.24 6.07 -2.39 -0.01 4.22 15 25 H 0.04 2.00 8.14 -2.39 -0.02 1.98 15 26 H 0.37 19.97 7.18 -74.05 -0.53 19.44 15 27 H 0.27 13.76 8.31 -92.71 -0.77 12.99 15 28 H 0.06 2.48 8.14 -2.39 -0.02 2.46 15 29 H 0.04 1.73 8.14 -2.39 -0.02 1.71 15 Total: -1.00 -55.95 231.38 -0.84 -56.79 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: -0.14 Total: 35.25 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: 2.37 Total: -24.03 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -3.32 Total: -80.01 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -1.77 Total: -32.74 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -55.95 -0.84 -56.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401800588.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.270 kcal (2) G-P(sol) polarization free energy of solvation -55.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds