Wall clock time and date at job start Mon Mar 30 2020 02:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.48930 * 2 1 4 4 C 1.53090 * 109.48304 * 239.96806 * 2 1 3 5 5 C 1.53176 * 109.16668 * 182.40914 * 4 2 1 6 6 C 1.53181 * 109.03564 * 56.97896 * 5 4 2 7 7 H 1.09004 * 109.52249 * 62.92485 * 6 5 4 8 8 N 1.46498 * 109.52343 * 183.11458 * 6 5 4 9 9 C 1.36932 * 120.00108 * 204.68604 * 8 6 5 10 10 H 1.08001 * 120.00417 * 0.02562 * 9 8 6 11 11 C 1.38813 * 120.00342 * 180.02562 * 9 8 6 12 12 N 1.31624 * 119.99359 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00203 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47155 * 90.00244 * 13 11 9 15 15 H 1.48508 * 109.47071 * 209.99714 * 13 11 9 16 16 H 1.48489 * 109.47252 * 329.99695 * 13 11 9 17 17 C 1.53096 * 109.16280 * 303.02405 * 6 5 4 18 18 O 1.42902 * 109.47734 * 120.02860 * 2 1 3 19 19 H 1.08997 * 109.47579 * 299.97356 * 1 2 3 20 20 H 1.09002 * 109.47002 * 59.97769 * 1 2 3 21 21 H 1.09006 * 109.47335 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.52564 * 302.31806 * 4 2 1 23 23 H 1.08998 * 109.52249 * 62.43969 * 4 2 1 24 24 H 1.09005 * 109.54225 * 297.11519 * 5 4 2 25 25 H 1.08991 * 109.54673 * 176.84737 * 5 4 2 26 26 H 0.97003 * 119.99599 * 24.69197 * 8 6 5 27 27 H 0.97009 * 119.99383 * 180.02562 * 12 11 9 28 28 H 1.08996 * 109.47593 * 177.59033 * 17 6 5 29 29 H 1.08997 * 109.48187 * 297.62027 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7223 -1.2495 5 6 3.5711 -0.7710 -1.2121 6 6 4.0177 -1.4601 0.0810 7 1 3.6613 -2.4902 0.0866 8 7 5.4803 -1.4463 0.1633 9 6 6.1331 -2.3920 0.9079 10 1 5.5698 -3.1484 1.4342 11 6 7.5190 -2.3786 0.9863 12 7 8.2055 -1.4571 0.3445 13 14 8.4095 -3.6692 2.0015 14 1 8.7171 -4.8448 1.1479 15 1 9.6739 -3.0972 2.5304 16 1 7.5458 -4.0915 3.1331 17 6 3.4307 -0.7092 1.2792 18 8 2.0065 -0.6742 1.1664 19 1 -0.3634 0.5134 0.8902 20 1 -0.3633 0.5142 -0.8898 21 1 -0.3634 -1.0277 -0.0005 22 1 1.6443 -1.7376 -1.2709 23 1 1.7140 -0.1850 -2.1398 24 1 3.9690 0.2435 -1.2408 25 1 3.9392 -1.3327 -2.0705 26 1 5.9862 -0.7671 -0.3097 27 1 9.1740 -1.4480 0.3990 28 1 3.7099 -1.2202 2.2005 29 1 3.8192 0.3090 1.2959 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402382287.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:41 Heat of formation + Delta-G solvation = -50.955985 kcal Electronic energy + Delta-G solvation = -11593.954726 eV Core-core repulsion = 9516.788759 eV Total energy + Delta-G solvation = -2077.165967 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.96543 -34.87596 -32.87626 -31.94978 -29.47036 -26.50996 -24.17120 -22.91737 -21.26877 -19.73312 -17.10282 -15.86235 -15.53530 -14.48845 -14.40278 -13.85243 -13.55837 -13.03735 -12.35345 -12.12664 -12.03755 -11.91080 -11.16964 -10.96696 -10.78489 -10.64055 -10.38917 -10.11589 -9.69629 -9.64955 -9.33145 -8.70126 -6.97737 -5.78540 -3.08179 3.43507 3.48787 3.50483 4.20924 4.59734 5.01784 5.19262 5.31760 5.47852 5.50017 5.69571 5.75125 5.84191 5.90538 5.96469 6.15001 6.19588 6.27388 6.34352 6.40272 6.61957 6.85770 6.95409 7.66768 7.78797 8.40047 9.51146 10.07227 10.42694 11.44067 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.084846 B = 0.009198 C = 0.008739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 329.929423 B = 3043.510269 C = 3203.095229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.085 3.915 3 H 0.051 0.949 4 C -0.144 4.144 5 C -0.128 4.128 6 C 0.148 3.852 7 H 0.054 0.946 8 N -0.721 5.721 9 C -0.243 4.243 10 H 0.072 0.928 11 C -0.012 4.012 12 N -0.933 5.933 13 Si 0.908 3.092 14 H -0.289 1.289 15 H -0.291 1.291 16 H -0.281 1.281 17 C 0.044 3.956 18 O -0.390 6.390 19 H 0.058 0.942 20 H 0.065 0.935 21 H 0.061 0.939 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.385 0.615 27 H 0.255 0.745 28 H 0.091 0.909 29 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.989 2.770 -2.075 12.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 H 0.069 0.931 4 C -0.182 4.182 5 C -0.166 4.166 6 C 0.037 3.963 7 H 0.072 0.928 8 N -0.363 5.363 9 C -0.374 4.374 10 H 0.090 0.910 11 C -0.208 4.208 12 N -0.581 5.581 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.207 1.207 17 C -0.035 4.035 18 O -0.309 6.309 19 H 0.078 0.922 20 H 0.084 0.916 21 H 0.080 0.920 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.218 0.782 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -12.054 2.542 -1.826 12.454 hybrid contribution 1.030 -0.315 0.204 1.096 sum -11.025 2.228 -1.622 11.364 Atomic orbital electron populations 1.21753 0.93913 1.02564 1.01781 1.21996 0.94260 0.95031 0.86054 0.93062 1.22200 0.96706 1.01453 0.97857 1.21878 0.94188 1.01119 0.99433 1.20806 0.86105 0.97480 0.91877 0.92782 1.42364 0.99074 1.35662 1.59189 1.19289 0.89486 1.06283 1.22342 0.91024 1.24758 0.96325 0.98952 1.00806 1.69672 1.06157 1.35640 1.46665 0.86174 0.79256 0.80918 0.79767 1.21683 1.21754 1.20656 1.23550 0.78435 1.00053 1.01507 1.87847 1.22810 1.77881 1.42363 0.92244 0.91608 0.92019 0.91337 0.91654 0.92235 0.91514 0.78169 0.93468 0.89093 0.94019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.56 37.16 0.36 -1.31 15 2 C 0.08 1.24 3.26 -26.68 -0.09 1.16 15 3 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 4 C -0.14 -2.07 5.42 -26.59 -0.14 -2.21 15 5 C -0.13 -2.23 5.50 -26.55 -0.15 -2.37 15 6 C 0.15 3.10 2.97 -67.79 -0.20 2.89 15 7 H 0.05 1.19 8.08 -51.93 -0.42 0.77 15 8 N -0.72 -18.41 5.13 -53.29 -0.27 -18.69 15 9 C -0.24 -6.82 9.93 -15.06 -0.15 -6.97 15 10 H 0.07 1.96 7.83 -52.49 -0.41 1.55 15 11 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 15 12 N -0.93 -28.31 13.06 55.49 0.72 -27.58 15 13 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 15 14 H -0.29 -7.15 7.11 56.52 0.40 -6.75 15 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 15 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 17 C 0.04 0.86 6.43 37.21 0.24 1.10 15 18 O -0.39 -7.07 10.41 -35.23 -0.37 -7.44 15 19 H 0.06 0.67 8.14 -51.93 -0.42 0.24 15 20 H 0.06 0.62 8.14 -51.93 -0.42 0.20 15 21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 22 H 0.07 0.99 8.14 -51.93 -0.42 0.56 15 23 H 0.06 0.79 8.14 -51.93 -0.42 0.36 15 24 H 0.06 1.03 8.14 -51.93 -0.42 0.60 15 25 H 0.07 1.17 8.14 -51.93 -0.42 0.75 15 26 H 0.38 10.36 7.80 -40.82 -0.32 10.04 15 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 15 28 H 0.09 1.89 8.14 -51.93 -0.42 1.47 15 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 15 LS Contribution 241.48 15.07 3.64 3.64 Total: -1.00 -29.99 241.48 -6.04 -36.03 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -4.51 Total: 4.72 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -0.23 Total: -8.16 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 0.45 Total: -46.27 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: -0.37 Total: -7.44 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -29.99 -6.04 -36.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402382287.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.929 kcal (2) G-P(sol) polarization free energy of solvation -29.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds