Wall clock time and date at job start Mon Mar 30 2020 01:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.08999 * 110.27425 * 55.64061 * 3 2 1 5 5 C 1.54949 * 110.30860 * 177.83399 * 3 2 1 6 6 C 1.55302 * 100.94413 * 155.36139 * 5 3 2 7 7 H 1.09001 * 110.84889 * 84.05891 * 6 5 3 8 8 N 1.46504 * 111.02137 * 207.59416 * 6 5 3 9 9 C 1.36930 * 120.00047 * 199.38349 * 8 6 5 10 10 H 1.08003 * 120.00412 * 0.02562 * 9 8 6 11 11 C 1.38810 * 119.99894 * 180.02562 * 9 8 6 12 12 N 1.31615 * 120.00181 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99906 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47216 * 89.99959 * 13 11 9 15 15 H 1.48505 * 109.47335 * 210.00131 * 13 11 9 16 16 H 1.48504 * 109.47362 * 329.99862 * 13 11 9 17 17 C 1.54383 * 102.24983 * 325.86565 * 6 5 3 18 18 O 1.43231 * 107.58803 * 21.35863 * 17 6 5 19 19 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 20 20 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 21 21 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 22 22 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 23 23 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 24 24 H 1.09007 * 111.12229 * 273.28454 * 5 3 2 25 25 H 1.09005 * 111.12131 * 37.43726 * 5 3 2 26 26 H 0.97006 * 119.99792 * 19.39146 * 8 6 5 27 27 H 0.97004 * 120.00119 * 180.02562 * 12 11 9 28 28 H 1.08995 * 109.83066 * 261.84193 * 17 6 5 29 29 H 1.09000 * 109.82562 * 140.87397 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6217 1.9909 0.8441 5 6 3.5883 1.4657 0.0549 6 6 3.8855 2.8477 -0.5880 7 1 3.8174 3.6434 0.1539 8 7 5.1991 2.8540 -1.2367 9 6 5.8223 4.0424 -1.5096 10 1 5.3457 4.9751 -1.2462 11 6 7.0666 4.0483 -2.1247 12 7 7.6473 2.9117 -2.4461 13 14 7.9171 5.6694 -2.4963 14 1 8.7628 6.0611 -1.3402 15 1 8.7687 5.5164 -3.7032 16 1 6.8960 6.7195 -2.7409 17 6 2.7560 2.9726 -1.6330 18 8 1.6988 2.0920 -1.2349 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.9455 1.4261 1.0840 25 1 4.0145 0.6565 -0.5382 26 1 5.6273 2.0163 -1.4730 27 1 8.5170 2.9158 -2.8756 28 1 3.1279 2.6833 -2.6158 29 1 2.3910 3.9993 -1.6619 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575455664.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:20 Heat of formation + Delta-G solvation = -49.237500 kcal Electronic energy + Delta-G solvation = -11444.473187 eV Core-core repulsion = 9367.381739 eV Total energy + Delta-G solvation = -2077.091448 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.01862 -34.56183 -33.23372 -31.61959 -29.09573 -27.05860 -23.76663 -23.01443 -20.79801 -19.78674 -17.29700 -16.28705 -15.46947 -14.61580 -14.10606 -13.72472 -13.39864 -13.03510 -12.71525 -12.55316 -11.75248 -11.43640 -11.19312 -10.88960 -10.83432 -10.65558 -10.59444 -10.23869 -9.98828 -9.73183 -8.97336 -8.91649 -7.04878 -5.82930 -3.13388 3.40749 3.46030 3.47790 4.31325 4.55550 4.98938 5.12783 5.32090 5.43116 5.50288 5.62321 5.64526 5.82138 5.95105 6.03074 6.10396 6.14868 6.26387 6.37106 6.41966 6.53364 6.63100 6.93608 7.57838 7.66448 8.35000 9.46475 10.01278 10.36698 11.39401 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.099946 B = 0.008403 C = 0.008105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 280.084662 B = 3331.477181 C = 3453.870848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C 0.081 3.919 4 H 0.063 0.937 5 C -0.158 4.158 6 C 0.151 3.849 7 H 0.061 0.939 8 N -0.715 5.715 9 C -0.248 4.248 10 H 0.072 0.928 11 C -0.010 4.010 12 N -0.931 5.931 13 Si 0.909 3.091 14 H -0.289 1.289 15 H -0.290 1.290 16 H -0.281 1.281 17 C 0.025 3.975 18 O -0.389 6.389 19 H 0.048 0.952 20 H 0.050 0.950 21 H 0.060 0.940 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.387 0.613 27 H 0.257 0.743 28 H 0.072 0.928 29 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.138 -3.710 5.066 11.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C 0.023 3.977 4 H 0.081 0.919 5 C -0.197 4.197 6 C 0.039 3.961 7 H 0.079 0.921 8 N -0.356 5.356 9 C -0.379 4.379 10 H 0.090 0.910 11 C -0.207 4.207 12 N -0.579 5.579 13 Si 0.740 3.260 14 H -0.216 1.216 15 H -0.217 1.217 16 H -0.206 1.206 17 C -0.054 4.054 18 O -0.308 6.308 19 H 0.068 0.932 20 H 0.069 0.931 21 H 0.079 0.921 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.221 0.779 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.246 -3.561 4.920 11.911 hybrid contribution 0.899 0.700 -0.259 1.168 sum -9.347 -2.861 4.661 10.829 Atomic orbital electron populations 1.21704 0.95753 1.00932 1.02104 1.21664 0.96319 0.95604 1.02341 1.22848 0.94079 0.92987 0.87760 0.91919 1.23493 0.94840 0.99512 1.01842 1.21701 0.86985 0.94643 0.92769 0.92111 1.42327 1.15779 1.06780 1.70695 1.19270 0.99712 0.85990 1.32885 0.91000 1.24772 0.97603 0.96997 1.01283 1.69664 1.17055 1.24230 1.46917 0.86162 0.79422 0.82889 0.77537 1.21612 1.21674 1.20645 1.24145 0.88295 0.92494 1.00512 1.88315 1.42858 1.60041 1.39614 0.93249 0.93125 0.92076 0.91203 0.91349 0.90549 0.90399 0.77912 0.93354 0.91018 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.83 37.16 0.37 -1.36 15 2 C -0.12 -1.58 5.68 -26.73 -0.15 -1.74 15 3 C 0.08 1.26 3.43 -25.70 -0.09 1.17 15 4 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 5 C -0.16 -2.70 6.20 -24.48 -0.15 -2.85 15 6 C 0.15 3.10 3.63 -65.98 -0.24 2.86 15 7 H 0.06 1.24 8.13 -51.93 -0.42 0.82 15 8 N -0.71 -18.10 5.19 -51.54 -0.27 -18.37 15 9 C -0.25 -6.88 9.98 -15.06 -0.15 -7.03 15 10 H 0.07 1.93 7.83 -52.48 -0.41 1.52 15 11 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 15 12 N -0.93 -28.03 13.06 55.49 0.72 -27.31 15 13 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 15 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 15 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 17 C 0.03 0.50 7.56 37.88 0.29 0.78 15 18 O -0.39 -7.16 10.69 -35.23 -0.38 -7.54 15 19 H 0.05 0.49 8.14 -51.93 -0.42 0.07 15 20 H 0.05 0.54 8.14 -51.93 -0.42 0.12 15 21 H 0.06 0.79 7.91 -51.93 -0.41 0.38 15 22 H 0.07 0.78 8.14 -51.93 -0.42 0.36 15 23 H 0.07 0.94 8.14 -51.93 -0.42 0.52 15 24 H 0.08 1.19 8.14 -51.92 -0.42 0.76 15 25 H 0.08 1.37 7.92 -51.93 -0.41 0.96 15 26 H 0.39 10.35 7.72 -40.82 -0.32 10.04 15 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 15 28 H 0.07 1.55 8.02 -51.93 -0.42 1.13 15 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 15 LS Contribution 244.44 15.07 3.68 3.68 Total: -1.00 -29.65 244.44 -5.97 -35.62 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -4.48 Total: 5.21 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -0.23 Total: -8.55 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 0.46 Total: -45.68 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -0.38 Total: -7.54 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.65 -5.97 -35.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575455664.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.620 kcal (2) G-P(sol) polarization free energy of solvation -29.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds