Wall clock time and date at job start Mon Mar 30 2020 02:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.46160 * 2 1 4 4 C 1.53035 * 109.46090 * 240.03700 * 2 1 3 5 5 C 1.53126 * 109.27961 * 180.80211 * 4 2 1 6 6 O 1.42903 * 109.57502 * 177.58895 * 5 4 2 7 7 C 1.50691 * 109.52048 * 297.75027 * 5 4 2 8 8 H 1.08002 * 120.00177 * 114.95548 * 7 5 4 9 9 C 1.37879 * 120.00273 * 294.94500 * 7 5 4 10 10 N 1.31518 * 119.99836 * 353.37467 * 9 7 5 11 11 Si 1.86796 * 120.00381 * 173.37063 * 9 7 5 12 12 H 1.48500 * 109.47130 * 90.00096 * 11 9 7 13 13 H 1.48500 * 109.47324 * 210.00471 * 11 9 7 14 14 H 1.48502 * 109.47019 * 330.00322 * 11 9 7 15 15 C 1.53123 * 109.15943 * 57.65300 * 5 4 2 16 16 C 1.53032 * 109.27944 * 302.34857 * 15 5 4 17 17 N 1.46847 * 109.46590 * 119.98119 * 2 1 3 18 18 H 1.09000 * 109.47283 * 300.01641 * 1 2 3 19 19 H 1.08997 * 109.47478 * 60.01832 * 1 2 3 20 20 H 1.09002 * 109.47236 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.50737 * 60.86530 * 4 2 1 22 22 H 1.09004 * 109.50535 * 300.74415 * 4 2 1 23 23 H 0.96696 * 113.99700 * 177.01887 * 6 5 4 24 24 H 0.96998 * 119.99962 * 5.32353 * 10 9 7 25 25 H 1.08999 * 109.50019 * 62.28914 * 15 5 4 26 26 H 1.08993 * 109.50174 * 182.36584 * 15 5 4 27 27 H 1.09000 * 109.46530 * 179.19308 * 16 15 5 28 28 H 1.09002 * 109.46296 * 299.16505 * 16 15 5 29 29 H 1.00897 * 111.00128 * 305.85655 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 3.5709 -0.7358 -1.2358 6 8 4.0532 -1.4562 -2.3718 7 6 4.0889 0.6786 -1.2793 8 1 4.6375 1.0789 -0.4395 9 6 3.8627 1.4618 -2.3913 10 7 3.3110 0.9373 -3.4638 11 14 4.3397 3.2678 -2.3746 12 1 5.7349 3.4157 -2.8611 13 1 3.4232 4.0301 -3.2601 14 1 4.2402 3.7932 -0.9892 15 6 4.0548 -1.4187 0.0464 16 6 3.4865 -0.6779 1.2589 17 7 2.0193 -0.6919 1.1993 18 1 -0.3634 0.5141 0.8898 19 1 -0.3634 0.5135 -0.8901 20 1 -0.3634 -1.0277 0.0005 21 1 1.6894 -0.1978 -2.1400 22 1 1.6658 -1.7445 -1.2579 23 1 5.0169 -1.4666 -2.4508 24 1 2.9928 0.0212 -3.4468 25 1 3.7125 -2.4535 0.0589 26 1 5.1439 -1.3952 0.0824 27 1 3.8175 -1.1702 2.1733 28 1 3.8403 0.3531 1.2531 29 1 1.6196 -0.2928 2.0353 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575515153.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:17 Heat of formation + Delta-G solvation = -87.319618 kcal Electronic energy + Delta-G solvation = -12315.068003 eV Core-core repulsion = 10236.325190 eV Total energy + Delta-G solvation = -2078.742812 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.24585 -36.92561 -34.22000 -33.14868 -31.30939 -27.81198 -26.78919 -23.68647 -22.50156 -20.74591 -18.84272 -17.51959 -16.78831 -16.04124 -15.77489 -15.31181 -14.97836 -14.33127 -14.20336 -13.44647 -13.02160 -12.79595 -12.63246 -12.55622 -12.38557 -12.05213 -11.97112 -11.80875 -11.66884 -10.74518 -10.55599 -9.94446 -9.30895 -8.41021 -6.30651 1.50719 1.57953 1.74887 2.56922 3.23839 3.32002 3.70371 4.13834 4.20758 4.29230 4.51318 4.59967 4.69182 4.76326 4.88649 4.98143 5.09499 5.15071 5.20588 5.24307 5.42805 5.59473 6.01037 6.15363 6.28605 6.66435 6.72498 7.22088 7.61692 8.90419 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.037397 B = 0.018022 C = 0.016413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.533767 B = 1553.293525 C = 1705.533184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.100 3.900 3 H 0.025 0.975 4 C -0.081 4.081 5 C 0.215 3.785 6 O -0.595 6.595 7 C -0.633 4.633 8 H 0.043 0.957 9 C -0.011 4.011 10 N -0.926 5.926 11 Si 1.104 2.896 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.275 1.275 15 C -0.123 4.123 16 C 0.074 3.926 17 N -0.681 5.681 18 H 0.075 0.925 19 H 0.051 0.949 20 H 0.062 0.938 21 H 0.037 0.963 22 H 0.034 0.966 23 H 0.363 0.637 24 H 0.279 0.721 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.023 0.977 29 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.799 -0.374 8.620 8.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.009 4.009 3 H 0.043 0.957 4 C -0.120 4.120 5 C 0.176 3.824 6 O -0.401 6.401 7 C -0.671 4.671 8 H 0.062 0.938 9 C -0.214 4.214 10 N -0.564 5.564 11 Si 0.928 3.072 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.200 1.200 15 C -0.161 4.161 16 C -0.055 4.055 17 N -0.314 5.314 18 H 0.094 0.906 19 H 0.070 0.930 20 H 0.081 0.919 21 H 0.056 0.944 22 H 0.053 0.947 23 H 0.209 0.791 24 H 0.092 0.908 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.106 0.894 28 H 0.041 0.959 29 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.419 0.240 7.309 7.703 hybrid contribution 0.857 -0.449 0.870 1.301 sum -1.562 -0.209 8.179 8.329 Atomic orbital electron populations 1.21756 0.93062 1.02404 1.02079 1.21207 0.95306 0.94718 0.89710 0.95714 1.21350 0.95966 0.97672 0.97003 1.19220 0.91323 0.89506 0.82320 1.86334 1.25497 1.77373 1.50904 1.22547 1.40111 0.99202 1.05220 0.93846 1.26883 0.94317 1.08273 0.91905 1.70695 1.37661 1.19086 1.28935 0.83114 0.76695 0.71364 0.76063 1.20319 1.21274 1.19983 1.22029 0.99270 0.98505 0.96333 1.21720 0.87832 0.98353 0.97626 1.60370 1.07273 1.59046 1.04674 0.90609 0.92980 0.91857 0.94422 0.94744 0.79127 0.90784 0.93270 0.92637 0.89401 0.95919 0.83307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.39 9.43 71.98 0.68 -3.71 15 2 C 0.10 4.06 2.83 44.94 0.13 4.19 15 3 H 0.02 1.14 7.31 -2.39 -0.02 1.12 15 4 C -0.08 -3.94 4.23 30.65 0.13 -3.81 15 5 C 0.21 10.75 0.72 -11.46 -0.01 10.74 15 6 O -0.60 -31.23 11.03 -148.98 -1.64 -32.87 15 7 C -0.63 -34.11 6.42 25.60 0.16 -33.95 15 8 H 0.04 2.34 6.70 -2.91 -0.02 2.32 15 9 C -0.01 -0.60 5.19 84.65 0.44 -0.17 15 10 N -0.93 -56.14 12.92 21.45 0.28 -55.86 15 11 Si 1.10 49.78 29.91 68.60 2.05 51.83 15 12 H -0.28 -11.93 7.11 99.48 0.71 -11.22 15 13 H -0.29 -12.99 7.11 99.48 0.71 -12.28 15 14 H -0.27 -11.53 7.11 99.48 0.71 -10.83 15 15 C -0.12 -5.20 5.21 30.65 0.16 -5.04 15 16 C 0.07 2.71 6.34 86.32 0.55 3.26 15 17 N -0.68 -23.85 6.50 -491.70 -3.20 -27.04 15 18 H 0.07 1.99 8.14 -2.39 -0.02 1.97 15 19 H 0.05 1.73 8.14 -2.39 -0.02 1.71 15 20 H 0.06 1.96 8.14 -2.39 -0.02 1.94 15 21 H 0.04 2.04 6.13 -2.39 -0.01 2.03 15 22 H 0.03 1.64 8.14 -2.39 -0.02 1.62 15 23 H 0.36 17.33 9.03 -74.06 -0.67 16.66 15 24 H 0.28 17.38 4.80 -92.71 -0.45 16.93 15 25 H 0.05 2.04 8.14 -2.39 -0.02 2.02 15 26 H 0.05 2.25 8.14 -2.39 -0.02 2.23 15 27 H 0.09 2.63 8.14 -2.39 -0.02 2.62 15 28 H 0.02 0.91 6.69 -2.39 -0.02 0.89 15 29 H 0.35 9.91 8.79 -89.70 -0.79 9.12 15 Total: -1.00 -63.32 228.49 -0.26 -63.58 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.01 Total: 28.85 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: 2.24 Total: -28.48 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -2.92 Total: -82.90 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -1.64 Total: -32.87 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 2.05 Total: 51.83 kcal Total: -63.32 -0.26 -63.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575515153.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.739 kcal (2) G-P(sol) polarization free energy of solvation -63.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds