Wall clock time and date at job start Mon Mar 30 2020 02:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47048 * 2 1 4 4 O 1.42897 * 109.47097 * 239.99382 * 2 1 3 5 5 C 1.53005 * 109.46876 * 119.99202 * 2 1 3 6 6 C 1.53935 * 113.73242 * 179.97438 * 5 2 1 7 7 N 1.47962 * 86.30001 * 138.02883 * 6 5 2 8 8 C 1.46897 * 111.00037 * 222.47236 * 7 6 5 9 9 C 1.50703 * 109.46834 * 169.99844 * 8 7 6 10 10 H 1.07999 * 120.00331 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99817 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99802 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99955 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47109 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46856 * 120.00833 * 13 11 9 16 16 H 1.48499 * 109.47315 * 240.00296 * 13 11 9 17 17 C 1.48187 * 90.67343 * 335.41160 * 7 6 5 18 18 H 1.09006 * 109.47056 * 300.00520 * 1 2 3 19 19 H 1.09001 * 109.46523 * 59.99970 * 1 2 3 20 20 H 1.08993 * 109.47103 * 180.02562 * 1 2 3 21 21 H 0.96690 * 114.00310 * 299.99954 * 4 2 1 22 22 H 1.09005 * 112.93265 * 48.43731 * 5 2 1 23 23 H 1.09002 * 113.76229 * 252.40280 * 6 5 2 24 24 H 1.09005 * 113.75703 * 23.65805 * 6 5 2 25 25 H 1.08999 * 109.47312 * 289.99731 * 8 7 6 26 26 H 1.08999 * 109.46989 * 50.00663 * 8 7 6 27 27 H 0.97007 * 119.99931 * 179.97438 * 12 11 9 28 28 H 1.09005 * 113.65869 * 270.26633 * 17 7 6 29 29 H 1.09002 * 113.92722 * 138.95266 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0400 -0.7211 1.2494 6 6 3.5751 -0.7789 1.3482 7 7 3.3986 -0.4671 2.7838 8 6 4.3853 0.5246 3.2322 9 6 4.0270 0.9988 4.6171 10 1 3.1540 0.6028 5.1146 11 6 4.8144 1.9375 5.2496 12 7 5.8778 2.4193 4.6440 13 14 4.3700 2.5258 6.9659 14 1 3.1371 1.8352 7.4221 15 1 5.4837 2.2174 7.8987 16 1 4.1364 3.9921 6.9416 17 6 2.0913 0.1714 2.5024 18 1 -0.3633 0.5139 0.8900 19 1 -0.3632 0.5139 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 1.7211 -1.5952 -1.2327 22 1 1.5536 -1.6828 1.4130 23 1 3.9902 -1.7693 1.1617 24 1 4.0811 0.0068 0.7871 25 1 5.3758 0.0699 3.2488 26 1 4.3858 1.3722 2.5469 27 1 6.4316 3.0800 5.0888 28 1 2.1633 1.2362 2.2805 29 1 1.3198 -0.0584 3.2373 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642871930.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:44 Heat of formation + Delta-G solvation = -54.025892 kcal Electronic energy + Delta-G solvation = -11437.177916 eV Core-core repulsion = 9359.878828 eV Total energy + Delta-G solvation = -2077.299088 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.95707 -37.77869 -35.06720 -32.46086 -30.49870 -27.28604 -26.83448 -24.38875 -22.29067 -20.74491 -18.62625 -17.60927 -16.89255 -16.50054 -16.09357 -15.61484 -15.04784 -14.30972 -13.90328 -13.81021 -13.62357 -13.13455 -12.86335 -12.73518 -12.52497 -12.27032 -11.80984 -11.66203 -11.46583 -11.19901 -10.73202 -10.67976 -9.50572 -8.26346 -6.38049 1.38225 1.39282 1.53311 2.37096 3.06313 3.22823 3.28688 3.71491 3.90138 4.23277 4.36260 4.41987 4.58431 4.62796 4.77292 4.82680 4.90752 4.98198 5.01576 5.15232 5.26913 5.43055 5.52060 5.76137 6.11361 6.40619 6.77809 6.92811 7.32497 8.85913 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.071716 B = 0.008883 C = 0.008434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.335998 B = 3151.213879 C = 3319.119587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.114 3.886 3 H 0.075 0.925 4 O -0.575 6.575 5 C -0.123 4.123 6 C 0.006 3.994 7 N -0.500 5.500 8 C 0.175 3.825 9 C -0.529 4.529 10 H 0.061 0.939 11 C 0.000 4.000 12 N -0.935 5.935 13 Si 0.975 3.025 14 H -0.262 1.262 15 H -0.277 1.277 16 H -0.275 1.275 17 C 0.024 3.976 18 H 0.067 0.933 19 H 0.066 0.934 20 H 0.077 0.923 21 H 0.390 0.610 22 H 0.118 0.882 23 H 0.089 0.911 24 H 0.046 0.954 25 H -0.003 1.003 26 H -0.029 1.029 27 H 0.266 0.734 28 H 0.050 0.950 29 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.789 -5.259 -7.397 14.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.055 3.945 3 H 0.093 0.907 4 O -0.383 6.383 5 C -0.142 4.142 6 C -0.123 4.123 7 N -0.223 5.223 8 C 0.048 3.952 9 C -0.568 4.568 10 H 0.080 0.920 11 C -0.198 4.198 12 N -0.575 5.575 13 Si 0.799 3.201 14 H -0.186 1.186 15 H -0.203 1.203 16 H -0.201 1.201 17 C -0.105 4.105 18 H 0.086 0.914 19 H 0.085 0.915 20 H 0.096 0.904 21 H 0.239 0.761 22 H 0.136 0.864 23 H 0.107 0.893 24 H 0.064 0.936 25 H 0.015 0.985 26 H -0.012 1.012 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.308 -5.081 -6.983 13.447 hybrid contribution 0.288 0.789 0.479 0.967 sum -10.020 -4.292 -6.504 12.693 Atomic orbital electron populations 1.22386 0.94098 1.03721 1.02901 1.21843 0.94422 0.95224 0.83037 0.90685 1.86553 1.77882 1.30402 1.43429 1.23673 0.95058 1.00707 0.94746 1.23793 0.97192 1.01359 0.90004 1.68495 1.03704 1.33593 1.16471 1.19862 0.91562 0.88585 0.95239 1.21441 1.11282 1.22842 1.01186 0.92050 1.26000 0.94647 0.96264 1.02880 1.70103 1.16787 1.30693 1.39956 0.85256 0.78541 0.78032 0.78314 1.18606 1.20254 1.20068 1.23649 0.93512 0.96620 0.96705 0.91388 0.91531 0.90441 0.76083 0.86363 0.89279 0.93577 0.98461 1.01161 0.92528 0.93191 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 9.53 71.98 0.69 -2.57 15 2 C 0.11 2.87 3.37 30.60 0.10 2.97 15 3 H 0.08 2.22 7.94 -2.39 -0.02 2.20 15 4 O -0.58 -13.93 13.13 -148.98 -1.96 -15.88 15 5 C -0.12 -3.56 3.51 -10.15 -0.04 -3.60 15 6 C 0.01 0.21 7.33 86.41 0.63 0.84 15 7 N -0.50 -22.79 6.26 -909.38 -5.69 -28.48 15 8 C 0.17 9.85 4.58 85.56 0.39 10.24 15 9 C -0.53 -31.18 8.85 25.60 0.23 -30.96 15 10 H 0.06 3.54 7.80 -2.91 -0.02 3.52 15 11 C 0.00 0.01 5.46 84.66 0.46 0.47 15 12 N -0.94 -57.80 13.29 21.45 0.28 -57.52 15 13 Si 0.97 44.98 29.54 68.60 2.03 47.01 15 14 H -0.26 -11.58 7.11 99.48 0.71 -10.87 15 15 H -0.28 -12.44 7.11 99.48 0.71 -11.73 15 16 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 17 C 0.02 0.92 7.04 86.36 0.61 1.52 15 18 H 0.07 1.30 8.14 -2.38 -0.02 1.28 15 19 H 0.07 1.18 8.14 -2.39 -0.02 1.16 15 20 H 0.08 1.15 8.14 -2.39 -0.02 1.13 15 21 H 0.39 5.95 9.04 -74.06 -0.67 5.28 15 22 H 0.12 2.87 8.14 -2.38 -0.02 2.85 15 23 H 0.09 3.00 8.14 -2.39 -0.02 2.98 15 24 H 0.05 1.86 7.75 -2.38 -0.02 1.84 15 25 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 15 26 H -0.03 -1.77 7.69 -2.39 -0.02 -1.78 15 27 H 0.27 15.30 8.31 -92.70 -0.77 14.53 15 28 H 0.05 2.04 7.60 -2.38 -0.02 2.03 15 29 H 0.08 3.02 8.14 -2.39 -0.02 3.00 15 Total: -1.00 -68.46 246.33 -1.81 -70.27 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 0.45 Total: 5.68 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 3.08 Total: -21.08 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -5.41 Total: -86.00 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -1.96 Total: -15.88 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -68.46 -1.81 -70.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642871930.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.246 kcal (2) G-P(sol) polarization free energy of solvation -68.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds