Wall clock time and date at job start Mon Mar 30 2020 01:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47384 * 2 1 4 4 O 1.42898 * 109.46862 * 64.99893 * 3 2 1 5 5 C 1.50701 * 109.47342 * 185.00006 * 3 2 1 6 6 H 1.08003 * 119.99763 * 120.00078 * 5 3 2 7 7 C 1.37871 * 119.99927 * 299.99671 * 5 3 2 8 8 N 1.31522 * 120.00471 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00023 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47290 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47330 * 120.00721 * 9 7 5 12 12 H 1.48508 * 109.47090 * 240.00471 * 9 7 5 13 13 C 1.52996 * 109.47080 * 305.00217 * 3 2 1 14 14 C 1.53515 * 114.17111 * 179.97438 * 13 3 2 15 15 N 1.47481 * 87.93334 * 220.13511 * 14 13 3 16 16 C 1.47488 * 87.83530 * 27.00963 * 15 14 13 17 17 H 1.09000 * 109.46979 * 180.02562 * 1 2 3 18 18 H 1.09000 * 109.47183 * 299.99725 * 1 2 3 19 19 H 1.09001 * 109.47048 * 59.99929 * 1 2 3 20 20 H 1.09009 * 109.47195 * 239.99991 * 2 1 3 21 21 H 1.09007 * 109.47432 * 119.99902 * 2 1 3 22 22 H 0.96704 * 113.99854 * 180.02562 * 4 3 2 23 23 H 0.96991 * 120.00411 * 179.97438 * 8 7 5 24 24 H 1.09002 * 113.25935 * 312.94641 * 13 3 2 25 25 H 1.09004 * 113.47747 * 105.37415 * 14 13 3 26 26 H 1.08995 * 113.53124 * 334.91476 * 14 13 3 27 27 H 1.00901 * 110.99857 * 138.69928 * 15 14 13 28 28 H 1.08996 * 113.47304 * 87.75121 * 16 15 14 29 29 H 1.08997 * 113.47652 * 218.22256 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 1.6619 2.0813 1.2210 5 6 3.5419 1.4442 -0.1238 6 1 4.0141 1.9359 -0.9616 7 6 4.3132 0.8183 0.8323 8 7 3.7382 0.2192 1.8523 9 14 6.1749 0.8211 0.6792 10 1 6.5696 1.5576 -0.5484 11 1 6.7683 1.4860 1.8671 12 1 6.6670 -0.5777 0.5976 13 6 1.4299 2.1991 -1.1816 14 6 1.8715 3.6658 -1.2842 15 7 0.4844 4.0017 -1.6559 16 6 0.0524 2.8135 -0.8963 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 1.8933 -0.5139 -0.8900 21 1 1.8934 -0.5138 0.8900 22 1 1.9526 3.0010 1.2901 23 1 4.2808 -0.2214 2.5247 24 1 1.4870 1.6488 -2.1208 25 1 2.5910 3.8478 -2.0826 26 1 2.1818 4.0945 -0.3314 27 1 0.1837 4.8506 -1.2010 28 1 -0.1231 3.0141 0.1606 29 1 -0.7697 2.2733 -1.3657 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642875116.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:21 Heat of formation + Delta-G solvation = -21.906276 kcal Electronic energy + Delta-G solvation = -12205.666742 eV Core-core repulsion = 10129.760464 eV Total energy + Delta-G solvation = -2075.906277 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.38945 -35.47060 -32.24278 -31.48270 -27.90506 -25.74619 -24.81766 -22.98593 -19.76672 -18.40155 -17.03541 -16.19559 -15.14998 -14.59885 -13.70711 -13.41330 -12.69550 -12.42990 -12.23158 -12.01087 -11.31086 -11.06226 -10.94671 -10.72675 -10.54378 -10.27253 -9.99931 -9.72342 -9.63683 -8.72211 -8.49812 -8.38081 -8.06136 -5.96486 -4.15970 3.26115 3.35268 3.38636 4.38587 4.88468 5.24735 5.38272 5.62259 5.94423 6.04888 6.16776 6.32069 6.35199 6.42321 6.45221 6.55674 6.61132 6.76621 6.95955 7.04461 7.35712 7.69982 7.77440 7.82615 8.02771 8.30998 8.84775 9.35508 9.60452 11.02843 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.046139 B = 0.016114 C = 0.013365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.720324 B = 1737.208616 C = 2094.450186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C 0.263 3.737 4 O -0.557 6.557 5 C -0.557 4.557 6 H 0.056 0.944 7 C 0.081 3.919 8 N -0.857 5.857 9 Si 0.885 3.115 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 C -0.122 4.122 14 C 0.013 3.987 15 N -0.643 5.643 16 C 0.004 3.996 17 H 0.029 0.971 18 H 0.050 0.950 19 H 0.042 0.958 20 H 0.044 0.956 21 H 0.094 0.906 22 H 0.341 0.659 23 H 0.258 0.742 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.305 0.695 28 H 0.073 0.927 29 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.637 3.222 -2.711 5.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.136 4.136 3 C 0.223 3.777 4 O -0.360 6.360 5 C -0.595 4.595 6 H 0.074 0.926 7 C -0.125 4.125 8 N -0.493 5.493 9 Si 0.713 3.287 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.210 1.210 13 C -0.141 4.141 14 C -0.117 4.117 15 N -0.266 5.266 16 C -0.126 4.126 17 H 0.048 0.952 18 H 0.069 0.931 19 H 0.061 0.939 20 H 0.063 0.937 21 H 0.113 0.887 22 H 0.185 0.815 23 H 0.068 0.932 24 H 0.104 0.896 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.116 0.884 28 H 0.091 0.909 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.993 2.359 -3.300 5.692 hybrid contribution 1.487 0.741 0.755 1.825 sum -2.506 3.101 -2.545 4.730 Atomic orbital electron populations 1.21956 0.99081 0.98989 1.00720 1.21364 0.91848 0.97670 1.02672 1.18563 0.91755 0.88480 0.78896 1.86529 1.80120 1.27374 1.41969 1.21601 0.91478 1.36920 1.09481 0.92562 1.24999 0.98130 0.94339 0.95013 1.70016 1.34582 1.33757 1.10995 0.86677 0.86258 0.77796 0.78016 1.19791 1.21045 1.20969 1.23436 0.93848 0.95068 1.01754 1.23462 0.91392 0.97255 0.99557 1.67366 1.06547 1.04302 1.48395 1.23767 0.98889 0.92485 0.97479 0.95195 0.93125 0.93920 0.93744 0.88744 0.81491 0.93210 0.89631 0.91041 0.91912 0.88407 0.90911 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 8.82 37.16 0.33 -2.68 15 2 C -0.10 -2.31 4.93 -26.74 -0.13 -2.45 15 3 C 0.26 6.20 0.38 -91.77 -0.03 6.17 15 4 O -0.56 -13.39 10.41 -35.23 -0.37 -13.76 15 5 C -0.56 -14.58 7.79 -34.44 -0.27 -14.85 15 6 H 0.06 1.48 7.55 -52.48 -0.40 1.08 15 7 C 0.08 2.16 5.24 -17.82 -0.09 2.07 15 8 N -0.86 -24.00 10.93 55.43 0.61 -23.40 15 9 Si 0.88 20.74 29.54 -169.99 -5.02 15.72 15 10 H -0.27 -6.36 7.11 56.52 0.40 -5.95 15 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 13 C -0.12 -2.49 2.72 -90.09 -0.25 -2.74 15 14 C 0.01 0.25 7.42 -7.54 -0.06 0.19 15 15 N -0.64 -11.02 8.71 -122.62 -1.07 -12.09 15 16 C 0.00 0.07 6.37 -7.53 -0.05 0.02 15 17 H 0.03 0.54 8.14 -51.93 -0.42 0.12 15 18 H 0.05 1.04 7.82 -51.93 -0.41 0.64 15 19 H 0.04 0.79 5.26 -51.93 -0.27 0.52 15 20 H 0.04 1.04 8.14 -51.92 -0.42 0.61 15 21 H 0.09 2.53 6.22 -51.93 -0.32 2.21 15 22 H 0.34 7.48 7.51 45.56 0.34 7.82 15 23 H 0.26 6.93 8.31 -40.82 -0.34 6.59 15 24 H 0.09 1.81 8.14 -51.93 -0.42 1.38 15 25 H 0.07 1.33 8.14 -51.93 -0.42 0.91 15 26 H 0.06 1.15 6.73 -51.93 -0.35 0.80 15 27 H 0.30 4.55 8.91 -39.29 -0.35 4.20 15 28 H 0.07 1.33 6.93 -51.93 -0.36 0.97 15 29 H 0.07 1.21 6.98 -51.93 -0.36 0.85 15 LS Contribution 229.39 15.07 3.46 3.46 Total: -1.00 -27.87 229.39 -6.25 -34.11 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -3.30 Total: 10.21 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -0.55 Total: -14.27 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: -0.46 Total: -35.48 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.37 Total: -13.76 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -27.87 -6.25 -34.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642875116.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.208 kcal (2) G-P(sol) polarization free energy of solvation -27.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds