Wall clock time and date at job start Mon Mar 30 2020 01:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47384 * 2 1 4 4 O 1.42898 * 109.46862 * 64.99893 * 3 2 1 5 5 C 1.50701 * 109.47342 * 185.00006 * 3 2 1 6 6 H 1.08003 * 119.99763 * 120.00078 * 5 3 2 7 7 C 1.37871 * 119.99927 * 299.99671 * 5 3 2 8 8 N 1.31522 * 120.00471 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00023 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47290 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47330 * 120.00721 * 9 7 5 12 12 H 1.48508 * 109.47090 * 240.00471 * 9 7 5 13 13 C 1.52996 * 109.47080 * 305.00217 * 3 2 1 14 14 C 1.53515 * 114.17111 * 179.97438 * 13 3 2 15 15 N 1.47481 * 87.93334 * 220.13511 * 14 13 3 16 16 C 1.47488 * 87.83530 * 27.00963 * 15 14 13 17 17 H 1.09000 * 109.46979 * 180.02562 * 1 2 3 18 18 H 1.09000 * 109.47183 * 299.99725 * 1 2 3 19 19 H 1.09001 * 109.47048 * 59.99929 * 1 2 3 20 20 H 1.09009 * 109.47195 * 239.99991 * 2 1 3 21 21 H 1.09007 * 109.47432 * 119.99902 * 2 1 3 22 22 H 0.96704 * 113.99854 * 180.02562 * 4 3 2 23 23 H 0.96991 * 120.00411 * 179.97438 * 8 7 5 24 24 H 1.09002 * 113.25935 * 312.94641 * 13 3 2 25 25 H 1.09004 * 113.47747 * 105.37415 * 14 13 3 26 26 H 1.08995 * 113.53124 * 334.91476 * 14 13 3 27 27 H 1.00901 * 110.99857 * 138.69928 * 15 14 13 28 28 H 1.08996 * 113.47304 * 87.75121 * 16 15 14 29 29 H 1.08997 * 113.47652 * 218.22256 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 1.6619 2.0813 1.2210 5 6 3.5419 1.4442 -0.1238 6 1 4.0141 1.9359 -0.9616 7 6 4.3132 0.8183 0.8323 8 7 3.7382 0.2192 1.8523 9 14 6.1749 0.8211 0.6792 10 1 6.5696 1.5576 -0.5484 11 1 6.7683 1.4860 1.8671 12 1 6.6670 -0.5777 0.5976 13 6 1.4299 2.1991 -1.1816 14 6 1.8715 3.6658 -1.2842 15 7 0.4844 4.0017 -1.6559 16 6 0.0524 2.8135 -0.8963 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 1.8933 -0.5139 -0.8900 21 1 1.8934 -0.5138 0.8900 22 1 1.9526 3.0010 1.2901 23 1 4.2808 -0.2214 2.5247 24 1 1.4870 1.6488 -2.1208 25 1 2.5910 3.8478 -2.0826 26 1 2.1818 4.0945 -0.3314 27 1 0.1837 4.8506 -1.2010 28 1 -0.1231 3.0141 0.1606 29 1 -0.7697 2.2733 -1.3657 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642875116.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:21 Heat of formation + Delta-G solvation = -43.820410 kcal Electronic energy + Delta-G solvation = -12206.617010 eV Core-core repulsion = 10129.760464 eV Total energy + Delta-G solvation = -2076.856545 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.96909 -37.23284 -34.23341 -33.31645 -29.64583 -27.44848 -26.36194 -24.80686 -21.51132 -20.02878 -18.97647 -17.86287 -16.68402 -16.60112 -15.51697 -15.02862 -14.45522 -14.07012 -13.93501 -13.60978 -13.14053 -12.90751 -12.71316 -12.54190 -12.22758 -12.08855 -11.74325 -11.47102 -11.34412 -10.58710 -10.39008 -9.99010 -9.81623 -7.99140 -6.24443 1.39454 1.43715 1.52821 2.43386 3.20534 3.44211 3.82096 4.10368 4.23062 4.52782 4.63143 4.67271 4.72217 4.85114 4.95988 4.97837 5.06404 5.16257 5.34977 5.35796 5.57848 5.71751 5.90910 6.10211 6.33367 6.45704 6.83746 7.42800 7.65546 8.98362 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.046139 B = 0.016114 C = 0.013365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.720324 B = 1737.208616 C = 2094.450186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.100 4.100 3 C 0.259 3.741 4 O -0.567 6.567 5 C -0.566 4.566 6 H 0.051 0.949 7 C 0.035 3.965 8 N -0.886 5.886 9 Si 0.943 3.057 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.284 1.284 13 C -0.129 4.129 14 C 0.018 3.982 15 N -0.636 5.636 16 C 0.017 3.983 17 H 0.046 0.954 18 H 0.043 0.957 19 H 0.059 0.941 20 H 0.037 0.963 21 H 0.059 0.941 22 H 0.349 0.651 23 H 0.256 0.744 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.323 0.677 28 H 0.072 0.928 29 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.073 3.989 -3.384 6.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.138 4.138 3 C 0.219 3.781 4 O -0.371 6.371 5 C -0.604 4.604 6 H 0.069 0.931 7 C -0.168 4.168 8 N -0.524 5.524 9 Si 0.769 3.231 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.210 1.210 13 C -0.148 4.148 14 C -0.112 4.112 15 N -0.260 5.260 16 C -0.113 4.113 17 H 0.065 0.935 18 H 0.062 0.938 19 H 0.078 0.922 20 H 0.056 0.944 21 H 0.078 0.922 22 H 0.193 0.807 23 H 0.065 0.935 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.135 0.865 28 H 0.090 0.910 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.433 3.144 -3.982 6.737 hybrid contribution 1.614 0.512 0.948 1.941 sum -2.818 3.656 -3.033 5.524 Atomic orbital electron populations 1.21808 0.96185 1.00315 1.01136 1.21294 0.94475 0.97478 1.00577 1.18547 0.90708 0.88911 0.79916 1.86497 1.80078 1.28059 1.42469 1.21938 0.93302 1.36233 1.08957 0.93109 1.25661 1.01881 0.94280 0.94941 1.70152 1.35769 1.34729 1.11707 0.85766 0.81791 0.77579 0.77920 1.19356 1.20918 1.20989 1.23285 0.95929 0.95656 0.99922 1.23385 0.92242 0.95899 0.99686 1.67303 1.05400 1.04949 1.48394 1.23630 0.97617 0.92458 0.97629 0.93513 0.93834 0.92172 0.94398 0.92239 0.80670 0.93473 0.90377 0.91166 0.91686 0.86476 0.90987 0.90194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.29 8.82 71.98 0.64 -4.65 15 2 C -0.10 -4.73 4.93 30.59 0.15 -4.58 15 3 C 0.26 12.08 0.38 -11.54 0.00 12.08 15 4 O -0.57 -26.95 10.41 -148.98 -1.55 -28.50 15 5 C -0.57 -29.53 7.79 25.60 0.20 -29.34 15 6 H 0.05 2.64 7.55 -2.91 -0.02 2.62 15 7 C 0.03 1.87 5.24 84.65 0.44 2.31 15 8 N -0.89 -50.13 10.93 21.45 0.23 -49.90 15 9 Si 0.94 42.64 29.54 68.60 2.03 44.67 15 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 15 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 12 H -0.28 -12.75 7.11 99.48 0.71 -12.05 15 13 C -0.13 -5.06 2.72 -10.45 -0.03 -5.09 15 14 C 0.02 0.64 7.42 83.58 0.62 1.26 15 15 N -0.64 -19.98 8.71 -541.87 -4.72 -24.70 15 16 C 0.02 0.55 6.37 83.58 0.53 1.08 15 17 H 0.05 1.61 8.14 -2.39 -0.02 1.59 15 18 H 0.04 1.72 7.82 -2.39 -0.02 1.70 15 19 H 0.06 2.09 5.26 -2.39 -0.01 2.07 15 20 H 0.04 1.77 8.14 -2.38 -0.02 1.75 15 21 H 0.06 3.23 6.22 -2.38 -0.01 3.22 15 22 H 0.35 15.01 7.51 -74.05 -0.56 14.46 15 23 H 0.26 13.93 8.31 -92.72 -0.77 13.16 15 24 H 0.08 3.19 8.14 -2.39 -0.02 3.17 15 25 H 0.07 2.49 8.14 -2.39 -0.02 2.47 15 26 H 0.06 2.26 6.73 -2.39 -0.02 2.24 15 27 H 0.32 8.58 8.91 -89.69 -0.80 7.78 15 28 H 0.07 2.45 6.93 -2.39 -0.02 2.44 15 29 H 0.08 2.53 6.98 -2.39 -0.02 2.51 15 Total: -1.00 -57.68 229.39 -1.66 -59.35 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: -0.20 Total: 26.02 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 2.55 Total: -26.93 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -4.49 Total: -74.60 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -1.55 Total: -28.50 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -57.68 -1.66 -59.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642875116.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.525 kcal (2) G-P(sol) polarization free energy of solvation -57.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds