Wall clock time and date at job start Mon Mar 30 2020 02:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 110.45613 * 2 1 4 4 C 1.54480 * 110.62546 * 122.68497 * 2 1 3 5 5 O 1.44421 * 104.80307 * 142.68168 * 4 2 1 6 6 C 1.44426 * 105.27491 * 319.48307 * 5 4 2 7 7 C 1.54476 * 104.80008 * 40.51397 * 6 5 4 8 8 H 1.09000 * 110.62975 * 94.72298 * 7 6 5 9 9 N 1.46509 * 110.51040 * 217.37478 * 7 6 5 10 10 C 1.46502 * 120.00065 * 227.49151 * 9 7 6 11 11 C 1.36930 * 119.99734 * 47.49413 * 9 7 6 12 12 H 1.08007 * 119.99956 * 7.35640 * 11 9 7 13 13 C 1.38814 * 119.99930 * 187.35177 * 11 9 7 14 14 N 1.31610 * 119.99980 * 39.20661 * 13 11 9 15 15 Si 1.86805 * 119.99966 * 219.20573 * 13 11 9 16 16 H 1.48503 * 109.46739 * 180.02562 * 15 13 11 17 17 H 1.48500 * 109.47111 * 299.99848 * 15 13 11 18 18 H 1.48495 * 109.47132 * 60.00147 * 15 13 11 19 19 H 1.09001 * 109.46835 * 193.83226 * 1 2 3 20 20 H 1.09002 * 109.46849 * 313.83393 * 1 2 3 21 21 H 1.08997 * 109.46958 * 73.83086 * 1 2 3 22 22 H 1.09006 * 110.36838 * 261.51026 * 4 2 1 23 23 H 1.08998 * 110.37752 * 23.73518 * 4 2 1 24 24 H 1.08998 * 110.37341 * 281.68601 * 6 5 4 25 25 H 1.08999 * 110.37018 * 159.34529 * 6 5 4 26 26 H 1.08998 * 109.47253 * 206.86569 * 10 9 7 27 27 H 1.08998 * 109.47380 * 326.86652 * 10 9 7 28 28 H 1.09001 * 109.46753 * 86.86812 * 10 9 7 29 29 H 0.97004 * 120.00037 * 359.52024 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0742 -0.7808 1.2168 5 8 3.2435 -1.4685 0.7212 6 6 2.8787 -1.9395 -0.5945 7 6 2.0714 -0.7799 -1.2190 8 1 2.7181 -0.1434 -1.8230 9 7 0.9661 -1.3008 -2.0273 10 6 0.7342 -0.7768 -3.3756 11 6 0.1498 -2.2774 -1.5225 12 1 0.2441 -2.5797 -0.4899 13 6 -0.7991 -2.8788 -2.3378 14 7 -0.5082 -3.1585 -3.5905 15 14 -2.4891 -3.2912 -1.6570 16 1 -3.3105 -3.9231 -2.7206 17 1 -2.3474 -4.2323 -0.5170 18 1 -3.1526 -2.0468 -1.1920 19 1 -0.3633 -0.9979 0.2457 20 1 -0.3633 0.7118 0.7413 21 1 -0.3633 0.2862 -0.9870 22 1 2.3491 -0.0931 2.0168 23 1 1.3325 -1.4966 1.5710 24 1 2.2610 -2.8344 -0.5194 25 1 3.7715 -2.1421 -1.1860 26 1 -0.3194 -0.8871 -3.6320 27 1 1.0075 0.2779 -3.4076 28 1 1.3420 -1.3315 -4.0904 29 1 0.3670 -2.9380 -3.9460 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688198257.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:59 Heat of formation + Delta-G solvation = -14.993331 kcal Electronic energy + Delta-G solvation = -12267.522352 eV Core-core repulsion = 10191.915843 eV Total energy + Delta-G solvation = -2075.606509 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.09143 -35.53086 -32.42459 -30.62202 -28.02514 -26.06994 -25.30737 -22.77120 -21.21441 -19.07468 -17.23179 -15.92976 -15.11898 -14.59966 -13.96066 -13.59351 -13.45938 -12.87547 -12.57720 -11.87012 -11.53278 -11.42285 -10.80441 -10.58699 -10.36299 -10.28181 -10.12203 -9.97470 -9.79328 -9.59825 -9.05834 -8.16062 -6.99742 -6.23099 -3.04253 3.48391 3.54059 3.70458 4.48374 4.69012 5.18926 5.28240 5.40748 5.53943 5.74844 5.96746 6.04015 6.15605 6.36650 6.39537 6.46809 6.53995 6.68176 6.71227 6.90605 6.94689 7.09219 7.36522 7.40643 7.95440 8.51437 9.04353 9.86410 10.23196 11.13056 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.045171 B = 0.016187 C = 0.014728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.722208 B = 1729.315629 C = 1900.720892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.142 4.142 3 H 0.062 0.938 4 C 0.054 3.946 5 O -0.392 6.392 6 C 0.031 3.969 7 C 0.153 3.847 8 H 0.061 0.939 9 N -0.592 5.592 10 C 0.130 3.870 11 C -0.363 4.363 12 H 0.069 0.931 13 C -0.017 4.017 14 N -0.901 5.901 15 Si 1.046 2.954 16 H -0.287 1.287 17 H -0.293 1.293 18 H -0.293 1.293 19 H 0.074 0.926 20 H 0.020 0.980 21 H 0.064 0.936 22 H 0.075 0.925 23 H 0.056 0.944 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.015 0.985 28 H 0.005 0.995 29 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.476 5.189 5.060 7.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.164 4.164 3 H 0.080 0.920 4 C -0.023 4.023 5 O -0.311 6.311 6 C -0.047 4.047 7 C 0.043 3.957 8 H 0.079 0.921 9 N -0.315 5.315 10 C -0.016 4.016 11 C -0.491 4.491 12 H 0.087 0.913 13 C -0.220 4.220 14 N -0.541 5.541 15 Si 0.876 3.124 16 H -0.213 1.213 17 H -0.220 1.220 18 H -0.220 1.220 19 H 0.093 0.907 20 H 0.039 0.961 21 H 0.082 0.918 22 H 0.093 0.907 23 H 0.074 0.926 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.033 0.967 28 H 0.023 0.977 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.186 4.458 4.757 6.626 hybrid contribution 1.355 0.686 0.307 1.550 sum 2.541 5.144 5.064 7.652 Atomic orbital electron populations 1.21697 0.93033 1.01927 1.00879 1.22937 0.98230 0.98535 0.96658 0.91952 1.23404 0.87821 0.94720 0.96330 1.88977 1.35504 1.74346 1.32272 1.23964 0.98850 0.99224 0.82644 1.21558 0.88896 0.93381 0.91830 0.92117 1.44026 1.31503 1.42888 1.13132 1.21095 1.00873 0.93784 0.85801 1.19713 1.14476 1.18494 0.96373 0.91283 1.25514 1.03291 0.97419 0.95806 1.70858 1.25810 1.39224 1.18197 0.83761 0.77280 0.76022 0.75317 1.21301 1.22033 1.22047 0.90723 0.96124 0.91751 0.90711 0.92622 0.90420 0.90727 0.91805 0.96655 0.97713 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.31 7.87 37.16 0.29 -2.02 15 2 C -0.14 -2.66 3.68 -89.05 -0.33 -2.99 15 3 H 0.06 1.07 8.14 -51.93 -0.42 0.64 15 4 C 0.05 0.97 7.18 37.93 0.27 1.24 15 5 O -0.39 -7.83 11.65 -35.23 -0.41 -8.25 15 6 C 0.03 0.64 7.15 37.93 0.27 0.91 15 7 C 0.15 3.18 3.63 -66.36 -0.24 2.94 15 8 H 0.06 1.19 7.98 -51.93 -0.41 0.78 15 9 N -0.59 -14.11 1.82 -171.69 -0.31 -14.42 15 10 C 0.13 3.00 8.80 59.85 0.53 3.53 15 11 C -0.36 -9.46 5.81 -15.06 -0.09 -9.55 15 12 H 0.07 1.83 6.29 -52.48 -0.33 1.50 15 13 C -0.02 -0.47 4.46 -17.43 -0.08 -0.54 15 14 N -0.90 -26.17 12.50 55.49 0.69 -25.48 15 15 Si 1.05 24.61 30.05 -169.99 -5.11 19.50 15 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 17 H -0.29 -6.68 7.11 56.52 0.40 -6.27 15 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 19 H 0.07 1.60 5.38 -51.93 -0.28 1.32 15 20 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 15 21 H 0.06 1.38 7.19 -51.93 -0.37 1.01 15 22 H 0.07 1.14 8.14 -51.93 -0.42 0.72 15 23 H 0.06 1.02 7.65 -51.93 -0.40 0.62 15 24 H 0.08 1.79 6.31 -51.93 -0.33 1.46 15 25 H 0.07 1.43 8.14 -51.93 -0.42 1.01 15 26 H 0.06 1.61 6.46 -51.93 -0.34 1.27 15 27 H 0.01 0.31 8.09 -51.93 -0.42 -0.11 15 28 H 0.00 0.11 7.19 -51.93 -0.37 -0.26 15 29 H 0.27 7.90 6.29 -40.82 -0.26 7.64 15 LS Contribution 227.32 15.07 3.43 3.43 Total: -1.00 -28.15 227.32 -5.08 -33.23 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -3.99 Total: -1.54 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 0.63 Total: -6.47 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.38 Total: -39.90 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -0.41 Total: -8.25 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.11 Total: 19.50 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -28.15 -5.08 -33.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688198257.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.233 kcal (2) G-P(sol) polarization free energy of solvation -28.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds