Wall clock time and date at job start Mon Mar 30 2020 02:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 110.45613 * 2 1 4 4 C 1.54480 * 110.62546 * 122.68497 * 2 1 3 5 5 O 1.44421 * 104.80307 * 142.68168 * 4 2 1 6 6 C 1.44426 * 105.27491 * 319.48307 * 5 4 2 7 7 C 1.54476 * 104.80008 * 40.51397 * 6 5 4 8 8 H 1.09000 * 110.62975 * 94.72298 * 7 6 5 9 9 N 1.46509 * 110.51040 * 217.37478 * 7 6 5 10 10 C 1.46502 * 120.00065 * 227.49151 * 9 7 6 11 11 C 1.36930 * 119.99734 * 47.49413 * 9 7 6 12 12 H 1.08007 * 119.99956 * 7.35640 * 11 9 7 13 13 C 1.38814 * 119.99930 * 187.35177 * 11 9 7 14 14 N 1.31610 * 119.99980 * 39.20661 * 13 11 9 15 15 Si 1.86805 * 119.99966 * 219.20573 * 13 11 9 16 16 H 1.48503 * 109.46739 * 180.02562 * 15 13 11 17 17 H 1.48500 * 109.47111 * 299.99848 * 15 13 11 18 18 H 1.48495 * 109.47132 * 60.00147 * 15 13 11 19 19 H 1.09001 * 109.46835 * 193.83226 * 1 2 3 20 20 H 1.09002 * 109.46849 * 313.83393 * 1 2 3 21 21 H 1.08997 * 109.46958 * 73.83086 * 1 2 3 22 22 H 1.09006 * 110.36838 * 261.51026 * 4 2 1 23 23 H 1.08998 * 110.37752 * 23.73518 * 4 2 1 24 24 H 1.08998 * 110.37341 * 281.68601 * 6 5 4 25 25 H 1.08999 * 110.37018 * 159.34529 * 6 5 4 26 26 H 1.08998 * 109.47253 * 206.86569 * 10 9 7 27 27 H 1.08998 * 109.47380 * 326.86652 * 10 9 7 28 28 H 1.09001 * 109.46753 * 86.86812 * 10 9 7 29 29 H 0.97004 * 120.00037 * 359.52024 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0742 -0.7808 1.2168 5 8 3.2435 -1.4685 0.7212 6 6 2.8787 -1.9395 -0.5945 7 6 2.0714 -0.7799 -1.2190 8 1 2.7181 -0.1434 -1.8230 9 7 0.9661 -1.3008 -2.0273 10 6 0.7342 -0.7768 -3.3756 11 6 0.1498 -2.2774 -1.5225 12 1 0.2441 -2.5797 -0.4899 13 6 -0.7991 -2.8788 -2.3378 14 7 -0.5082 -3.1585 -3.5905 15 14 -2.4891 -3.2912 -1.6570 16 1 -3.3105 -3.9231 -2.7206 17 1 -2.3474 -4.2323 -0.5170 18 1 -3.1526 -2.0468 -1.1920 19 1 -0.3633 -0.9979 0.2457 20 1 -0.3633 0.7118 0.7413 21 1 -0.3633 0.2862 -0.9870 22 1 2.3491 -0.0931 2.0168 23 1 1.3325 -1.4966 1.5710 24 1 2.2610 -2.8344 -0.5194 25 1 3.7715 -2.1421 -1.1860 26 1 -0.3194 -0.8871 -3.6320 27 1 1.0075 0.2779 -3.4076 28 1 1.3420 -1.3315 -4.0904 29 1 0.3670 -2.9380 -3.9460 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688198257.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:59 Heat of formation + Delta-G solvation = -32.562980 kcal Electronic energy + Delta-G solvation = -12268.284229 eV Core-core repulsion = 10191.915843 eV Total energy + Delta-G solvation = -2076.368386 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.70738 -37.35782 -34.16737 -32.42645 -29.74305 -27.99794 -26.88360 -24.55807 -22.96230 -20.75848 -19.14791 -17.53037 -16.82388 -16.22942 -15.69189 -15.46351 -15.24840 -14.65078 -14.19053 -13.61231 -13.30938 -13.06229 -12.61369 -12.44658 -12.11470 -11.95321 -11.88017 -11.63004 -11.48021 -11.34891 -10.68103 -10.19072 -8.94994 -8.34176 -5.10721 1.59213 1.65414 1.83571 2.64038 3.02234 3.21992 3.56094 3.83937 4.01451 4.15950 4.36531 4.45988 4.62619 4.74507 4.81022 4.86631 4.95708 4.96238 5.05213 5.16525 5.27607 5.37437 5.72976 5.78482 5.99092 6.41496 7.03836 7.87108 8.22948 9.02867 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.045171 B = 0.016187 C = 0.014728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.722208 B = 1729.315629 C = 1900.720892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.137 4.137 3 H 0.089 0.911 4 C 0.053 3.947 5 O -0.396 6.396 6 C 0.038 3.962 7 C 0.142 3.858 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.139 3.861 11 C -0.341 4.341 12 H 0.062 0.938 13 C -0.072 4.072 14 N -0.936 5.936 15 Si 1.091 2.909 16 H -0.298 1.298 17 H -0.281 1.281 18 H -0.281 1.281 19 H 0.049 0.951 20 H 0.050 0.950 21 H 0.041 0.959 22 H 0.110 0.890 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.087 0.913 26 H 0.037 0.963 27 H 0.045 0.955 28 H -0.007 1.007 29 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.816 6.543 6.560 9.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.158 4.158 3 H 0.107 0.893 4 C -0.024 4.024 5 O -0.315 6.315 6 C -0.040 4.040 7 C 0.034 3.966 8 H 0.095 0.905 9 N -0.327 5.327 10 C -0.006 4.006 11 C -0.469 4.469 12 H 0.080 0.920 13 C -0.269 4.269 14 N -0.578 5.578 15 Si 0.918 3.082 16 H -0.225 1.225 17 H -0.207 1.207 18 H -0.207 1.207 19 H 0.068 0.932 20 H 0.069 0.931 21 H 0.060 0.940 22 H 0.129 0.871 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.105 0.895 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.011 0.989 29 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.547 5.834 6.294 8.720 hybrid contribution 1.334 0.322 -0.096 1.376 sum 2.882 6.155 6.198 9.198 Atomic orbital electron populations 1.21558 0.93688 1.01199 1.00401 1.22906 0.97566 0.99683 0.95602 0.89281 1.23559 0.87101 0.94874 0.96828 1.88982 1.36274 1.74501 1.31728 1.23791 0.98878 0.97937 0.83443 1.21843 0.88373 0.93775 0.92617 0.90545 1.44208 1.32431 1.42444 1.13635 1.20950 0.99059 0.95245 0.85341 1.19781 1.13864 1.17641 0.95644 0.91977 1.26560 1.06043 0.98467 0.95844 1.70973 1.25284 1.42243 1.19350 0.83136 0.73879 0.76443 0.74730 1.22469 1.20679 1.20718 0.93163 0.93120 0.93978 0.87150 0.93497 0.93506 0.89522 0.94416 0.93631 0.98854 0.93194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.07 7.87 71.98 0.57 -3.50 15 2 C -0.14 -4.67 3.68 -9.78 -0.04 -4.70 15 3 H 0.09 2.62 8.14 -2.39 -0.02 2.60 15 4 C 0.05 1.72 7.18 72.49 0.52 2.24 15 5 O -0.40 -14.80 11.65 -148.98 -1.74 -16.54 15 6 C 0.04 1.50 7.15 72.48 0.52 2.02 15 7 C 0.14 5.61 3.63 46.00 0.17 5.78 15 8 H 0.08 2.78 7.98 -2.39 -0.02 2.76 15 9 N -0.60 -28.36 1.82 -697.09 -1.27 -29.63 15 10 C 0.14 6.42 8.80 127.77 1.12 7.54 15 11 C -0.34 -17.74 5.81 84.04 0.49 -17.25 15 12 H 0.06 3.30 6.29 -2.91 -0.02 3.28 15 13 C -0.07 -3.95 4.46 84.86 0.38 -3.57 15 14 N -0.94 -55.54 12.50 21.65 0.27 -55.27 15 15 Si 1.09 50.08 30.05 68.60 2.06 52.15 15 16 H -0.30 -14.14 7.11 99.48 0.71 -13.44 15 17 H -0.28 -12.17 7.11 99.48 0.71 -11.46 15 18 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 19 H 0.05 2.07 5.38 -2.39 -0.01 2.06 15 20 H 0.05 1.53 8.14 -2.39 -0.02 1.51 15 21 H 0.04 1.72 7.19 -2.39 -0.02 1.70 15 22 H 0.11 2.85 8.14 -2.38 -0.02 2.83 15 23 H 0.05 1.61 7.65 -2.39 -0.02 1.60 15 24 H 0.05 2.15 6.31 -2.39 -0.02 2.14 15 25 H 0.09 3.19 8.14 -2.39 -0.02 3.18 15 26 H 0.04 1.92 6.46 -2.39 -0.02 1.90 15 27 H 0.05 1.78 8.09 -2.39 -0.02 1.76 15 28 H -0.01 -0.32 7.19 -2.39 -0.02 -0.33 15 29 H 0.26 15.47 6.29 -92.71 -0.58 14.88 15 Total: -1.00 -59.58 227.32 4.36 -55.22 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: 1.31 Total: 5.52 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 3.73 Total: -11.44 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -1.00 Total: -84.91 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -1.74 Total: -16.54 kcal Atomic # 14 Polarization: 50.08 SS G_CDS: 2.06 Total: 52.15 kcal Total: -59.58 4.36 -55.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688198257.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.655 kcal (2) G-P(sol) polarization free energy of solvation -59.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds