Wall clock time and date at job start Mon Mar 30 2020 02:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46881 * 2 1 4 4 C 1.52997 * 109.47504 * 120.00361 * 2 1 3 5 5 C 1.50701 * 109.47212 * 184.99949 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 N 1.46905 * 109.47170 * 240.00659 * 2 1 3 14 14 C 1.47792 * 110.99818 * 59.99621 * 13 2 1 15 15 C 1.54593 * 105.24261 * 123.48256 * 14 13 2 16 16 C 1.55001 * 102.46474 * 21.06536 * 15 14 13 17 17 O 1.44577 * 102.67172 * 323.51009 * 16 15 14 18 18 H 1.09002 * 109.47016 * 299.99380 * 1 2 3 19 19 H 1.09000 * 109.47400 * 59.99781 * 1 2 3 20 20 H 1.09004 * 109.46881 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 22 22 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 23 23 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 24 24 H 1.09007 * 110.28972 * 242.42329 * 14 13 2 25 25 H 1.08997 * 110.29515 * 4.44250 * 14 13 2 26 26 H 1.09007 * 110.80641 * 139.30844 * 15 14 13 27 27 H 1.08999 * 110.80830 * 262.62091 * 15 14 13 28 28 H 1.09005 * 110.77469 * 81.80236 * 16 15 14 29 29 H 1.08999 * 110.77154 * 205.02799 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5420 -0.6149 1.3126 6 1 4.0790 -0.0854 0.5395 7 6 4.2305 -1.1927 2.3581 8 7 3.5765 -1.8371 3.2998 9 14 6.0921 -1.0602 2.4371 10 1 6.4845 0.3708 2.4965 11 1 6.5871 -1.7605 3.6495 12 1 6.6847 -1.6862 1.2278 13 7 2.0197 -0.6924 -1.1996 14 6 1.5457 -0.0221 -2.4285 15 6 2.8262 0.3219 -3.2235 16 6 3.8643 -0.6633 -2.6283 17 8 3.4900 -0.7134 -1.2327 18 1 -0.3633 0.5137 0.8901 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 1.7517 -1.7716 1.2054 22 1 1.6054 -0.2618 2.1369 23 1 4.0609 -2.2439 4.0352 24 1 0.9118 -0.6953 -3.0058 25 1 0.9997 0.8871 -2.1767 26 1 2.6825 0.1366 -4.2880 27 1 3.1243 1.3557 -3.0489 28 1 3.7721 -1.6470 -3.0887 29 1 4.8764 -0.2762 -2.7463 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695835981.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:52 Heat of formation + Delta-G solvation = 3.264427 kcal Electronic energy + Delta-G solvation = -11894.452711 eV Core-core repulsion = 9819.637917 eV Total energy + Delta-G solvation = -2074.814794 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.33065 -34.62673 -32.38699 -31.23076 -28.65915 -27.18694 -23.88412 -22.53639 -21.12958 -19.40410 -16.31868 -15.80847 -15.79864 -14.35891 -14.27343 -13.39600 -13.21271 -12.77659 -12.10472 -11.92676 -11.63977 -11.42183 -11.23838 -10.99838 -10.81856 -10.46228 -10.34115 -10.25413 -9.68488 -9.02412 -8.81425 -8.17188 -7.72358 -5.78996 -3.74670 3.46310 3.49454 3.53930 3.65481 4.64824 4.81699 5.02714 5.13109 5.46251 5.62253 5.74314 5.79260 5.88450 5.94472 6.00726 6.08141 6.17829 6.28325 6.41343 6.75007 6.96310 7.24839 7.65742 7.80802 8.04017 8.24176 8.66387 9.31500 9.85489 11.33573 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.042311 B = 0.014859 C = 0.011500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.613124 B = 1883.923568 C = 2434.204428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.060 3.940 3 H 0.038 0.962 4 C 0.033 3.967 5 C -0.489 4.489 6 H 0.070 0.930 7 C 0.051 3.949 8 N -0.905 5.905 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.328 5.328 14 C -0.004 4.004 15 C -0.159 4.159 16 C 0.020 3.980 17 O -0.189 6.189 18 H 0.063 0.937 19 H 0.041 0.959 20 H 0.061 0.939 21 H 0.026 0.974 22 H 0.020 0.980 23 H 0.257 0.743 24 H 0.084 0.916 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.259 4.078 -11.016 12.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.048 4.048 3 H 0.056 0.944 4 C -0.004 4.004 5 C -0.528 4.528 6 H 0.087 0.913 7 C -0.148 4.148 8 N -0.547 5.547 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.095 5.095 14 C -0.133 4.133 15 C -0.198 4.198 16 C -0.059 4.059 17 O -0.194 6.194 18 H 0.082 0.918 19 H 0.060 0.940 20 H 0.080 0.920 21 H 0.044 0.956 22 H 0.039 0.961 23 H 0.066 0.934 24 H 0.103 0.897 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.262 3.455 -10.617 11.632 hybrid contribution 1.246 0.947 -0.199 1.577 sum -2.016 4.402 -10.816 11.850 Atomic orbital electron populations 1.21868 0.95056 1.02187 1.00686 1.22320 0.93081 0.96657 0.92737 0.94370 1.19113 0.96353 0.95905 0.89070 1.21365 0.91806 1.33045 1.06575 0.91251 1.24969 0.97889 0.95879 0.96066 1.69959 1.35204 1.37063 1.12435 0.86692 0.86611 0.77796 0.77018 1.20702 1.21679 1.20378 1.70417 0.90942 1.46565 1.01604 1.23691 0.97261 0.98745 0.93581 1.23441 0.95405 1.00536 1.00435 1.23631 0.97869 0.97820 0.86547 1.92361 1.11668 1.96254 1.19120 0.91824 0.93954 0.91975 0.95560 0.96143 0.93371 0.89734 0.92160 0.90566 0.91133 0.92286 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.06 37.16 0.34 -2.10 15 2 C 0.06 1.32 2.31 -67.71 -0.16 1.16 15 3 H 0.04 0.85 8.14 -51.93 -0.42 0.43 15 4 C 0.03 0.89 4.65 -27.88 -0.13 0.76 15 5 C -0.49 -14.46 7.81 -34.44 -0.27 -14.73 15 6 H 0.07 2.05 5.65 -52.49 -0.30 1.75 15 7 C 0.05 1.53 5.46 -17.82 -0.10 1.44 15 8 N -0.91 -28.39 13.29 55.43 0.74 -27.65 15 9 Si 0.89 23.01 29.54 -169.99 -5.02 17.99 15 10 H -0.28 -7.11 7.11 56.52 0.40 -6.71 15 11 H -0.29 -7.41 7.11 56.52 0.40 -7.01 15 12 H -0.28 -7.13 7.11 56.52 0.40 -6.73 15 13 N -0.33 -6.88 5.64 -105.14 -0.59 -7.48 15 14 C 0.00 -0.06 6.31 -2.50 -0.02 -0.08 15 15 C -0.16 -2.23 7.12 -24.84 -0.18 -2.41 15 16 C 0.02 0.34 7.94 38.21 0.30 0.64 15 17 O -0.19 -4.35 8.37 -14.37 -0.12 -4.47 15 18 H 0.06 1.05 8.14 -51.93 -0.42 0.62 15 19 H 0.04 0.62 6.52 -51.93 -0.34 0.28 15 20 H 0.06 1.08 8.14 -51.93 -0.42 0.66 15 21 H 0.03 0.77 8.14 -51.93 -0.42 0.34 15 22 H 0.02 0.57 8.14 -51.93 -0.42 0.15 15 23 H 0.26 7.65 8.31 -40.82 -0.34 7.31 15 24 H 0.08 1.18 8.14 -51.93 -0.42 0.76 15 25 H 0.06 0.89 6.42 -51.93 -0.33 0.55 15 26 H 0.08 0.84 8.14 -51.93 -0.42 0.42 15 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 29 H 0.09 1.30 8.14 -51.93 -0.42 0.87 15 LS Contribution 237.14 15.07 3.57 3.57 Total: -1.00 -32.63 237.14 -5.96 -38.59 By element: Atomic # 1 Polarization: -0.91 SS G_CDS: -4.33 Total: -5.24 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -0.20 Total: -15.32 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.14 Total: -35.13 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -0.12 Total: -4.47 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -32.63 -5.96 -38.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835981.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.856 kcal (2) G-P(sol) polarization free energy of solvation -32.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds