Wall clock time and date at job start Mon Mar 30 2020 02:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46881 * 2 1 4 4 C 1.52997 * 109.47504 * 120.00361 * 2 1 3 5 5 C 1.50701 * 109.47212 * 184.99949 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 N 1.46905 * 109.47170 * 240.00659 * 2 1 3 14 14 C 1.47792 * 110.99818 * 59.99621 * 13 2 1 15 15 C 1.54593 * 105.24261 * 123.48256 * 14 13 2 16 16 C 1.55001 * 102.46474 * 21.06536 * 15 14 13 17 17 O 1.44577 * 102.67172 * 323.51009 * 16 15 14 18 18 H 1.09002 * 109.47016 * 299.99380 * 1 2 3 19 19 H 1.09000 * 109.47400 * 59.99781 * 1 2 3 20 20 H 1.09004 * 109.46881 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 22 22 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 23 23 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 24 24 H 1.09007 * 110.28972 * 242.42329 * 14 13 2 25 25 H 1.08997 * 110.29515 * 4.44250 * 14 13 2 26 26 H 1.09007 * 110.80641 * 139.30844 * 15 14 13 27 27 H 1.08999 * 110.80830 * 262.62091 * 15 14 13 28 28 H 1.09005 * 110.77469 * 81.80236 * 16 15 14 29 29 H 1.08999 * 110.77154 * 205.02799 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5420 -0.6149 1.3126 6 1 4.0790 -0.0854 0.5395 7 6 4.2305 -1.1927 2.3581 8 7 3.5765 -1.8371 3.2998 9 14 6.0921 -1.0602 2.4371 10 1 6.4845 0.3708 2.4965 11 1 6.5871 -1.7605 3.6495 12 1 6.6847 -1.6862 1.2278 13 7 2.0197 -0.6924 -1.1996 14 6 1.5457 -0.0221 -2.4285 15 6 2.8262 0.3219 -3.2235 16 6 3.8643 -0.6633 -2.6283 17 8 3.4900 -0.7134 -1.2327 18 1 -0.3633 0.5137 0.8901 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 1.7517 -1.7716 1.2054 22 1 1.6054 -0.2618 2.1369 23 1 4.0609 -2.2439 4.0352 24 1 0.9118 -0.6953 -3.0058 25 1 0.9997 0.8871 -2.1767 26 1 2.6825 0.1366 -4.2880 27 1 3.1243 1.3557 -3.0489 28 1 3.7721 -1.6470 -3.0887 29 1 4.8764 -0.2762 -2.7463 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695835981.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:51 Heat of formation + Delta-G solvation = -19.622447 kcal Electronic energy + Delta-G solvation = -11895.445160 eV Core-core repulsion = 9819.637917 eV Total energy + Delta-G solvation = -2075.807243 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.78964 -36.36459 -34.45878 -32.71944 -30.24596 -29.03788 -25.56400 -24.31736 -22.48199 -21.05419 -18.48030 -17.40860 -17.16369 -16.43934 -15.78191 -14.84699 -14.74780 -14.34045 -13.85842 -13.45818 -13.29184 -13.17336 -12.98346 -12.63718 -12.36887 -12.26359 -12.18477 -11.79905 -11.20097 -11.00667 -10.88970 -10.47766 -9.28583 -8.08442 -6.11046 1.38004 1.42586 1.49908 2.16383 2.48056 3.22937 3.52970 3.85116 3.99942 4.24627 4.26291 4.49599 4.53710 4.59656 4.74128 4.81874 4.91102 4.94733 5.11630 5.26919 5.28173 5.42023 5.62308 5.91974 6.04671 6.19510 6.44877 7.02950 7.53188 9.04509 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.042311 B = 0.014859 C = 0.011500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.613124 B = 1883.923568 C = 2434.204428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.067 3.933 3 H 0.030 0.970 4 C 0.037 3.963 5 C -0.499 4.499 6 H 0.069 0.931 7 C -0.009 4.009 8 N -0.943 5.943 9 Si 0.958 3.042 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.346 5.346 14 C -0.008 4.008 15 C -0.146 4.146 16 C 0.009 3.991 17 O -0.244 6.244 18 H 0.069 0.931 19 H 0.078 0.922 20 H 0.057 0.943 21 H -0.008 1.008 22 H -0.002 1.002 23 H 0.258 0.742 24 H 0.108 0.892 25 H 0.074 0.926 26 H 0.114 0.886 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.161 5.027 -12.986 14.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.042 4.042 3 H 0.048 0.952 4 C 0.000 4.000 5 C -0.537 4.537 6 H 0.087 0.913 7 C -0.205 4.205 8 N -0.586 5.586 9 Si 0.784 3.216 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.200 1.200 13 N -0.114 5.114 14 C -0.136 4.136 15 C -0.184 4.184 16 C -0.069 4.069 17 O -0.249 6.249 18 H 0.088 0.912 19 H 0.097 0.903 20 H 0.076 0.924 21 H 0.010 0.990 22 H 0.016 0.984 23 H 0.067 0.933 24 H 0.126 0.874 25 H 0.093 0.907 26 H 0.132 0.868 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.158 4.416 -12.609 13.728 hybrid contribution 1.182 0.639 0.336 1.385 sum -1.976 5.055 -12.273 13.420 Atomic orbital electron populations 1.21803 0.91627 1.02625 1.02802 1.22113 0.95724 0.95083 0.91233 0.95185 1.18967 0.95511 0.94282 0.91282 1.21738 0.93233 1.32424 1.06354 0.91297 1.25877 1.03022 0.95745 0.95820 1.70099 1.37116 1.38241 1.13146 0.85610 0.80566 0.78316 0.77124 1.19472 1.21040 1.19960 1.70277 0.90224 1.47968 1.02957 1.23878 0.98386 0.99635 0.91690 1.23406 0.93079 0.99820 1.02129 1.23906 0.99463 0.99310 0.84250 1.92256 1.13089 1.96576 1.22935 0.91235 0.90313 0.92364 0.98968 0.98375 0.93342 0.87435 0.90724 0.86802 0.90757 0.91662 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.34 9.06 71.98 0.65 -3.69 15 2 C 0.07 2.92 2.31 44.91 0.10 3.03 15 3 H 0.03 1.33 8.14 -2.39 -0.02 1.31 15 4 C 0.04 2.06 4.65 29.85 0.14 2.20 15 5 C -0.50 -30.16 7.81 25.60 0.20 -29.96 15 6 H 0.07 4.12 5.65 -2.91 -0.02 4.11 15 7 C -0.01 -0.57 5.46 84.66 0.46 -0.11 15 8 N -0.94 -60.71 13.29 21.45 0.28 -60.43 15 9 Si 0.96 47.84 29.54 68.60 2.03 49.86 15 10 H -0.27 -12.85 7.11 99.48 0.71 -12.14 15 11 H -0.28 -13.82 7.11 99.48 0.71 -13.11 15 12 H -0.27 -13.40 7.11 99.48 0.71 -12.70 15 13 N -0.35 -14.15 5.64 -486.56 -2.74 -16.89 15 14 C -0.01 -0.23 6.31 86.67 0.55 0.32 15 15 C -0.15 -3.56 7.12 31.82 0.23 -3.33 15 16 C 0.01 0.28 7.94 72.67 0.58 0.86 15 17 O -0.24 -11.14 8.37 -52.24 -0.44 -11.58 15 18 H 0.07 2.20 8.14 -2.39 -0.02 2.18 15 19 H 0.08 2.03 6.52 -2.39 -0.02 2.02 15 20 H 0.06 1.97 8.14 -2.39 -0.02 1.95 15 21 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 15 22 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 15 23 H 0.26 15.70 8.31 -92.71 -0.77 14.92 15 24 H 0.11 2.55 8.14 -2.38 -0.02 2.53 15 25 H 0.07 1.90 6.42 -2.39 -0.02 1.89 15 26 H 0.11 1.95 8.14 -2.38 -0.02 1.93 15 27 H 0.07 1.77 8.14 -2.39 -0.02 1.75 15 28 H 0.07 1.95 8.14 -2.38 -0.02 1.93 15 29 H 0.10 2.80 8.14 -2.39 -0.02 2.78 15 Total: -1.00 -72.18 237.14 3.15 -69.03 By element: Atomic # 1 Polarization: -0.43 SS G_CDS: 1.11 Total: 0.68 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 2.91 Total: -30.68 kcal Atomic # 7 Polarization: -74.86 SS G_CDS: -2.46 Total: -77.32 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -0.44 Total: -11.58 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.03 Total: 49.86 kcal Total: -72.18 3.15 -69.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835981.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.411 kcal (2) G-P(sol) polarization free energy of solvation -72.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds