Wall clock time and date at job start Mon Mar 30 2020 02:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46615 * 2 1 4 4 C 1.52995 * 109.47029 * 240.00702 * 2 1 3 5 5 C 1.50699 * 109.47142 * 174.99822 * 4 2 1 6 6 H 1.07997 * 120.00085 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00243 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00131 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00313 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47069 * 89.99895 * 9 7 5 11 11 H 1.48500 * 109.47308 * 210.00204 * 9 7 5 12 12 H 1.48497 * 109.46683 * 329.99951 * 9 7 5 13 13 O 1.42891 * 109.47139 * 120.00330 * 2 1 3 14 14 C 1.42903 * 114.00030 * 270.00041 * 13 2 1 15 15 C 1.53935 * 113.73471 * 111.23481 * 14 13 2 16 16 N 1.48193 * 86.10337 * 90.77945 * 15 14 13 17 17 C 1.47967 * 90.79407 * 24.60047 * 16 15 14 18 18 H 1.08994 * 109.46759 * 179.97438 * 1 2 3 19 19 H 1.08997 * 109.46807 * 299.99764 * 1 2 3 20 20 H 1.09002 * 109.47217 * 59.99507 * 1 2 3 21 21 H 1.09000 * 109.46869 * 294.99717 * 4 2 1 22 22 H 1.08998 * 109.47587 * 54.99515 * 4 2 1 23 23 H 0.97000 * 120.00329 * 179.97438 * 8 7 5 24 24 H 1.09002 * 112.93710 * 339.66760 * 14 13 2 25 25 H 1.09000 * 113.76137 * 205.06320 * 15 14 13 26 26 H 1.09002 * 113.75885 * 336.43020 * 15 14 13 27 27 H 1.00897 * 111.07161 * 137.52128 * 16 15 14 28 28 H 1.09001 * 113.75575 * 221.08036 * 17 16 15 29 29 H 1.08993 * 113.75515 * 89.72269 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5419 -0.6147 -1.3128 6 1 4.0790 -0.0861 -0.5392 7 6 4.2305 -1.1932 -2.3579 8 7 3.5766 -1.8383 -3.2992 9 14 6.0922 -1.0619 -2.4363 10 1 6.7001 -2.2146 -1.7243 11 1 6.5298 -1.0700 -3.8553 12 1 6.5267 0.2032 -1.7915 13 8 2.0064 -0.6737 1.1667 14 6 2.2001 0.1828 2.2940 15 6 1.2012 -0.0643 3.4389 16 7 2.1997 -1.0232 3.9677 17 6 3.2885 -0.3083 3.2655 18 1 -0.3632 -1.0276 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 1.7517 -1.7713 -1.2057 22 1 1.6054 -0.2616 -2.1370 23 1 4.0610 -2.2449 -4.0347 24 1 2.2999 1.2326 2.0179 25 1 1.0436 0.8035 4.0793 26 1 0.2704 -0.5311 3.1164 27 1 2.2945 -0.9333 4.9682 28 1 4.0224 -0.9697 2.8049 29 1 3.7427 0.4879 3.8552 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695865334.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:56 Heat of formation + Delta-G solvation = -45.784444 kcal Electronic energy + Delta-G solvation = -11536.923341 eV Core-core repulsion = 9459.981629 eV Total energy + Delta-G solvation = -2076.941712 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.57769 -37.91357 -35.05853 -32.74849 -29.29794 -27.59668 -26.89911 -25.14225 -21.98704 -20.87820 -18.51529 -17.97786 -17.46338 -16.59940 -15.79074 -15.25101 -14.89008 -14.36365 -13.91032 -13.59536 -13.41907 -13.30079 -13.15170 -12.64399 -12.60546 -12.28250 -11.96808 -11.56501 -11.23175 -11.17170 -10.56446 -10.18649 -9.78942 -8.17452 -6.26279 1.39100 1.41866 1.51845 2.42571 2.71163 3.15904 3.33649 3.66380 4.05248 4.21120 4.35436 4.41962 4.49302 4.62494 4.64354 4.82842 4.86000 5.00137 5.18765 5.22414 5.26705 5.45765 5.54727 5.81406 6.24888 6.42940 6.69202 6.86878 7.40729 8.94845 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.043833 B = 0.011535 C = 0.009588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.631610 B = 2426.804103 C = 2919.729736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.096 3.904 3 H 0.056 0.944 4 C 0.024 3.976 5 C -0.525 4.525 6 H 0.056 0.944 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.964 3.036 10 H -0.277 1.277 11 H -0.280 1.280 12 H -0.261 1.261 13 O -0.366 6.366 14 C 0.043 3.957 15 C -0.004 4.004 16 N -0.648 5.648 17 C 0.004 3.996 18 H 0.046 0.954 19 H 0.072 0.928 20 H 0.068 0.932 21 H -0.012 1.012 22 H 0.014 0.986 23 H 0.263 0.737 24 H 0.082 0.918 25 H 0.104 0.896 26 H 0.081 0.919 27 H 0.327 0.673 28 H 0.069 0.931 29 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.749 7.037 12.386 14.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.038 3.962 3 H 0.074 0.926 4 C -0.013 4.013 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.788 3.212 10 H -0.203 1.203 11 H -0.205 1.205 12 H -0.185 1.185 13 O -0.285 6.285 14 C -0.016 4.016 15 C -0.135 4.135 16 N -0.275 5.275 17 C -0.126 4.126 18 H 0.065 0.935 19 H 0.091 0.909 20 H 0.087 0.913 21 H 0.007 0.993 22 H 0.032 0.968 23 H 0.071 0.929 24 H 0.100 0.900 25 H 0.122 0.878 26 H 0.099 0.901 27 H 0.140 0.860 28 H 0.088 0.912 29 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.818 5.997 11.825 13.555 hybrid contribution 0.925 0.698 0.004 1.159 sum -1.893 6.695 11.829 13.723 Atomic orbital electron populations 1.22242 0.95230 1.01874 1.02495 1.22290 0.93323 0.95098 0.85460 0.92647 1.19141 0.95600 0.94660 0.91871 1.21508 0.93271 1.33955 1.07541 0.92597 1.25953 1.03747 0.94979 0.95370 1.70094 1.37570 1.37139 1.12924 0.85466 0.79448 0.78889 0.77360 1.20312 1.20534 1.18510 1.88025 1.85975 1.34866 1.19644 1.23782 0.96508 0.94060 0.87214 1.24340 0.97184 0.95979 0.95952 1.66908 1.04536 1.44436 1.11581 1.24034 0.95361 0.98016 0.95203 0.93466 0.90923 0.91278 0.99337 0.96812 0.92860 0.90036 0.87798 0.90098 0.85957 0.91239 0.87491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.58 9.53 71.98 0.69 -4.90 15 2 C 0.10 4.11 2.66 30.60 0.08 4.19 15 3 H 0.06 2.25 7.43 -2.39 -0.02 2.23 15 4 C 0.02 1.34 4.68 29.85 0.14 1.48 15 5 C -0.52 -30.95 8.88 25.60 0.23 -30.73 15 6 H 0.06 3.20 7.74 -2.91 -0.02 3.18 15 7 C 0.00 -0.21 5.46 84.65 0.46 0.25 15 8 N -0.94 -58.67 13.29 21.45 0.28 -58.38 15 9 Si 0.96 45.71 29.54 68.60 2.03 47.73 15 10 H -0.28 -12.93 7.11 99.48 0.71 -12.23 15 11 H -0.28 -12.84 7.11 99.48 0.71 -12.14 15 12 H -0.26 -11.68 7.11 99.48 0.71 -10.97 15 13 O -0.37 -15.97 9.76 -148.98 -1.45 -17.43 15 14 C 0.04 1.39 4.43 31.24 0.14 1.52 15 15 C 0.00 -0.11 8.75 86.36 0.76 0.65 15 16 N -0.65 -18.09 8.53 -527.32 -4.50 -22.59 15 17 C 0.00 0.11 8.74 86.41 0.76 0.87 15 18 H 0.05 1.72 8.14 -2.39 -0.02 1.70 15 19 H 0.07 2.05 8.14 -2.39 -0.02 2.03 15 20 H 0.07 2.23 8.14 -2.39 -0.02 2.21 15 21 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 15 22 H 0.01 0.78 8.14 -2.39 -0.02 0.76 15 23 H 0.26 15.43 8.31 -92.71 -0.77 14.66 15 24 H 0.08 2.31 7.47 -2.39 -0.02 2.29 15 25 H 0.10 1.79 8.14 -2.39 -0.02 1.78 15 26 H 0.08 2.21 8.14 -2.39 -0.02 2.19 15 27 H 0.33 6.86 8.92 -89.70 -0.80 6.06 15 28 H 0.07 2.39 8.14 -2.39 -0.02 2.37 15 29 H 0.11 2.18 8.14 -2.39 -0.02 2.16 15 Total: -1.00 -69.71 248.72 -0.08 -69.79 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 0.32 Total: 7.54 kcal Atomic # 6 Polarization: -29.91 SS G_CDS: 3.25 Total: -26.67 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -4.21 Total: -80.97 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -1.45 Total: -17.43 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -69.71 -0.08 -69.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695865334.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.007 kcal (2) G-P(sol) polarization free energy of solvation -69.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds