Wall clock time and date at job start Mon Mar 30 2020 02:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47071 * 2 1 4 4 N 1.46502 * 109.47118 * 120.00403 * 2 1 3 5 5 C 1.36941 * 119.99740 * 273.16872 * 4 2 1 6 6 H 1.08002 * 120.00049 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99901 * 180.02562 * 5 4 2 8 8 N 1.31621 * 120.00029 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00023 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46975 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47287 * 119.99502 * 9 7 5 12 12 H 1.48505 * 109.46614 * 239.99800 * 9 7 5 13 13 C 1.52998 * 109.47034 * 240.00208 * 2 1 3 14 14 C 1.53004 * 115.55106 * 65.25833 * 13 2 1 15 15 O 1.42893 * 109.46861 * 39.55035 * 14 13 2 16 16 C 1.53005 * 117.51694 * 210.95974 * 13 2 1 17 17 C 1.53001 * 117.49846 * 279.58918 * 13 2 1 18 18 H 1.08993 * 109.47327 * 59.99877 * 1 2 3 19 19 H 1.09004 * 109.47139 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47143 * 300.00037 * 1 2 3 21 21 H 0.96994 * 120.00190 * 93.17072 * 4 2 1 22 22 H 0.97002 * 119.99994 * 180.02562 * 8 7 5 23 23 H 1.09001 * 109.46921 * 279.55045 * 14 13 2 24 24 H 1.08998 * 109.47185 * 159.55286 * 14 13 2 25 25 H 0.96705 * 113.99917 * 180.02562 * 15 14 13 26 26 H 1.08997 * 117.49615 * 214.96686 * 16 13 2 27 27 H 1.08994 * 117.49959 * 359.97438 * 16 13 2 28 28 H 1.08995 * 117.49810 * 359.97438 * 17 13 2 29 29 H 1.08997 * 117.50036 * 144.97779 * 17 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1848 0.0011 2.3662 6 1 1.9564 1.0559 2.4071 7 6 2.6480 -0.6532 3.4994 8 7 2.9267 -1.9386 3.4495 9 14 2.8743 0.2902 5.0957 10 1 2.4933 1.7106 4.8895 11 1 2.0138 -0.3055 6.1491 12 1 4.2963 0.2157 5.5173 13 6 2.0400 -0.7212 -1.2493 14 6 1.7153 -0.0428 -2.5817 15 8 1.8595 1.3721 -2.4434 16 6 3.3727 -1.4651 -1.1415 17 6 2.0623 -2.2508 -1.2223 18 1 -0.3633 0.5138 -0.8899 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 2.2238 -1.6379 1.1593 22 1 3.2501 -2.3959 4.2415 23 1 0.6901 -0.2772 -2.8684 24 1 2.3990 -0.4044 -3.3497 25 1 1.6685 1.8678 -3.2514 26 1 4.0180 -1.4712 -2.0199 27 1 3.8866 -1.4404 -0.1807 28 1 1.7141 -2.7433 -0.3144 29 1 1.8453 -2.7738 -2.1536 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696095000.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:09 Heat of formation + Delta-G solvation = -16.377294 kcal Electronic energy + Delta-G solvation = -11709.279388 eV Core-core repulsion = 9633.612865 eV Total energy + Delta-G solvation = -2075.666522 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.58175 -35.77411 -33.71696 -31.29473 -28.52133 -26.29487 -23.97157 -22.04508 -21.53584 -18.05322 -17.30412 -17.05091 -15.12477 -14.80477 -14.20247 -13.64894 -13.25397 -12.64730 -12.34904 -12.18847 -11.62528 -11.13440 -10.88438 -10.79736 -10.64659 -10.27929 -10.03591 -9.97440 -9.51070 -9.42139 -9.20489 -8.71826 -6.85252 -5.68917 -2.95985 3.48517 3.54293 3.56597 4.16128 4.63933 4.66615 5.26607 5.35313 5.47584 5.56437 5.65553 5.73963 5.92354 6.07439 6.17617 6.32336 6.48530 6.60484 6.72334 6.83646 6.90632 7.08381 7.29353 7.80137 7.86993 8.51278 9.61649 10.21410 10.56221 11.54412 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.054197 B = 0.011461 C = 0.010565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.514158 B = 2442.489606 C = 2649.618720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.212 3.788 3 H 0.060 0.940 4 N -0.726 5.726 5 C -0.230 4.230 6 H 0.070 0.930 7 C -0.018 4.018 8 N -0.937 5.937 9 Si 0.905 3.095 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 C -0.131 4.131 14 C 0.120 3.880 15 O -0.561 6.561 16 C -0.166 4.166 17 C -0.171 4.171 18 H 0.036 0.964 19 H 0.042 0.958 20 H 0.050 0.950 21 H 0.383 0.617 22 H 0.253 0.747 23 H 0.044 0.956 24 H 0.039 0.961 25 H 0.370 0.630 26 H 0.080 0.920 27 H 0.111 0.889 28 H 0.103 0.897 29 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.547 2.168 -11.857 12.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.103 3.897 3 H 0.078 0.922 4 N -0.369 5.369 5 C -0.361 4.361 6 H 0.088 0.912 7 C -0.213 4.213 8 N -0.586 5.586 9 Si 0.737 3.263 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.132 4.132 14 C 0.042 3.958 15 O -0.365 6.365 16 C -0.203 4.203 17 C -0.208 4.208 18 H 0.055 0.945 19 H 0.061 0.939 20 H 0.069 0.931 21 H 0.218 0.782 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.216 0.784 26 H 0.099 0.901 27 H 0.130 0.870 28 H 0.121 0.879 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.368 2.125 -11.093 11.540 hybrid contribution 0.017 0.180 0.301 0.351 sum -2.352 2.304 -10.792 11.283 Atomic orbital electron populations 1.22322 0.99257 1.00311 0.99689 1.19514 0.91223 0.95256 0.83743 0.92205 1.42589 1.78469 1.09724 1.06108 1.19330 1.35709 0.93263 0.87825 0.91163 1.24711 1.02631 0.95922 0.98040 1.69670 1.52090 1.08119 1.28730 0.86126 0.77278 0.78872 0.84039 1.20600 1.22017 1.21995 1.21807 1.02181 0.93068 0.96138 1.21563 0.98439 0.80840 0.94930 1.86606 1.92873 1.18125 1.38936 1.23110 0.90430 1.03188 1.03527 1.22944 1.02346 0.92894 1.02662 0.94535 0.93907 0.93106 0.78181 0.93709 0.93754 0.94284 0.78438 0.90121 0.87039 0.87915 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 9.38 37.16 0.35 -2.75 15 2 C 0.21 4.64 2.66 -67.93 -0.18 4.46 15 3 H 0.06 1.42 7.50 -51.93 -0.39 1.03 15 4 N -0.73 -18.94 4.28 -53.43 -0.23 -19.17 15 5 C -0.23 -6.62 9.93 -15.06 -0.15 -6.77 15 6 H 0.07 1.99 7.83 -52.49 -0.41 1.58 15 7 C -0.02 -0.52 5.50 -17.43 -0.10 -0.62 15 8 N -0.94 -28.85 13.06 55.49 0.72 -28.12 15 9 Si 0.91 23.04 29.55 -169.99 -5.02 18.02 15 10 H -0.28 -6.95 7.11 56.52 0.40 -6.54 15 11 H -0.29 -7.47 7.11 56.52 0.40 -7.07 15 12 H -0.29 -7.47 7.11 56.52 0.40 -7.07 15 13 C -0.13 -2.38 1.95 -154.50 -0.30 -2.68 15 14 C 0.12 1.74 6.53 37.16 0.24 1.98 15 15 O -0.56 -8.27 12.69 -35.23 -0.45 -8.72 15 16 C -0.17 -3.03 9.42 -26.73 -0.25 -3.28 15 17 C -0.17 -2.94 9.51 -26.73 -0.25 -3.19 15 18 H 0.04 0.63 7.67 -51.93 -0.40 0.23 15 19 H 0.04 0.84 8.14 -51.93 -0.42 0.41 15 20 H 0.05 1.07 8.14 -51.93 -0.42 0.64 15 21 H 0.38 10.36 5.33 -40.82 -0.22 10.15 15 22 H 0.25 7.53 8.31 -40.82 -0.34 7.19 15 23 H 0.04 0.58 8.09 -51.93 -0.42 0.16 15 24 H 0.04 0.49 7.94 -51.93 -0.41 0.08 15 25 H 0.37 3.34 9.12 45.56 0.42 3.76 15 26 H 0.08 1.27 8.08 -51.93 -0.42 0.85 15 27 H 0.11 2.43 7.18 -51.93 -0.37 2.06 15 28 H 0.10 1.98 6.89 -51.93 -0.36 1.63 15 29 H 0.08 1.18 8.14 -51.93 -0.42 0.76 15 LS Contribution 244.15 15.07 3.68 3.68 Total: -1.00 -32.01 244.15 -5.32 -37.34 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -3.39 Total: 9.84 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -0.64 Total: -12.86 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: 0.50 Total: -47.29 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -0.45 Total: -8.72 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -32.01 -5.32 -37.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696095000.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.959 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds