Wall clock time and date at job start Mon Mar 30 2020 02:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47071 * 2 1 4 4 N 1.46502 * 109.47118 * 120.00403 * 2 1 3 5 5 C 1.36941 * 119.99740 * 273.16872 * 4 2 1 6 6 H 1.08002 * 120.00049 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99901 * 180.02562 * 5 4 2 8 8 N 1.31621 * 120.00029 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00023 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46975 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47287 * 119.99502 * 9 7 5 12 12 H 1.48505 * 109.46614 * 239.99800 * 9 7 5 13 13 C 1.52998 * 109.47034 * 240.00208 * 2 1 3 14 14 C 1.53004 * 115.55106 * 65.25833 * 13 2 1 15 15 O 1.42893 * 109.46861 * 39.55035 * 14 13 2 16 16 C 1.53005 * 117.51694 * 210.95974 * 13 2 1 17 17 C 1.53001 * 117.49846 * 279.58918 * 13 2 1 18 18 H 1.08993 * 109.47327 * 59.99877 * 1 2 3 19 19 H 1.09004 * 109.47139 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47143 * 300.00037 * 1 2 3 21 21 H 0.96994 * 120.00190 * 93.17072 * 4 2 1 22 22 H 0.97002 * 119.99994 * 180.02562 * 8 7 5 23 23 H 1.09001 * 109.46921 * 279.55045 * 14 13 2 24 24 H 1.08998 * 109.47185 * 159.55286 * 14 13 2 25 25 H 0.96705 * 113.99917 * 180.02562 * 15 14 13 26 26 H 1.08997 * 117.49615 * 214.96686 * 16 13 2 27 27 H 1.08994 * 117.49959 * 359.97438 * 16 13 2 28 28 H 1.08995 * 117.49810 * 359.97438 * 17 13 2 29 29 H 1.08997 * 117.50036 * 144.97779 * 17 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1848 0.0011 2.3662 6 1 1.9564 1.0559 2.4071 7 6 2.6480 -0.6532 3.4994 8 7 2.9267 -1.9386 3.4495 9 14 2.8743 0.2902 5.0957 10 1 2.4933 1.7106 4.8895 11 1 2.0138 -0.3055 6.1491 12 1 4.2963 0.2157 5.5173 13 6 2.0400 -0.7212 -1.2493 14 6 1.7153 -0.0428 -2.5817 15 8 1.8595 1.3721 -2.4434 16 6 3.3727 -1.4651 -1.1415 17 6 2.0623 -2.2508 -1.2223 18 1 -0.3633 0.5138 -0.8899 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 2.2238 -1.6379 1.1593 22 1 3.2501 -2.3959 4.2415 23 1 0.6901 -0.2772 -2.8684 24 1 2.3990 -0.4044 -3.3497 25 1 1.6685 1.8678 -3.2514 26 1 4.0180 -1.4712 -2.0199 27 1 3.8866 -1.4404 -0.1807 28 1 1.7141 -2.7433 -0.3144 29 1 1.8453 -2.7738 -2.1536 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696095000.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:09 Heat of formation + Delta-G solvation = -40.162304 kcal Electronic energy + Delta-G solvation = -11710.310783 eV Core-core repulsion = 9633.612865 eV Total energy + Delta-G solvation = -2076.697918 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.02711 -37.01290 -35.59286 -33.27712 -30.40204 -27.56122 -26.01306 -23.64941 -23.05594 -19.77146 -19.17088 -18.19922 -16.72683 -16.60521 -15.79482 -15.11458 -15.02162 -14.25816 -14.10802 -13.72606 -13.15085 -13.02238 -12.81126 -12.47773 -12.32000 -12.09573 -11.81984 -11.43941 -11.24863 -11.06786 -10.87034 -10.34121 -8.98423 -7.94312 -5.21444 1.45246 1.46251 1.56557 2.55947 2.84703 3.38866 3.49789 3.84359 3.98582 4.08093 4.31020 4.36262 4.57804 4.73588 4.78648 4.81742 4.97702 5.00205 5.18583 5.20512 5.38766 5.41929 5.52692 5.61549 6.29553 7.08805 7.34847 8.13040 8.37245 9.29713 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.054197 B = 0.011461 C = 0.010565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.514158 B = 2442.489606 C = 2649.618720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.205 3.795 3 H 0.036 0.964 4 N -0.737 5.737 5 C -0.237 4.237 6 H 0.069 0.931 7 C -0.077 4.077 8 N -0.971 5.971 9 Si 0.972 3.028 10 H -0.269 1.269 11 H -0.292 1.292 12 H -0.293 1.293 13 C -0.137 4.137 14 C 0.126 3.874 15 O -0.587 6.587 16 C -0.175 4.175 17 C -0.156 4.156 18 H 0.068 0.932 19 H 0.042 0.958 20 H 0.030 0.970 21 H 0.375 0.625 22 H 0.250 0.750 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.395 0.605 26 H 0.111 0.889 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.118 2.719 -13.503 14.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.097 3.903 3 H 0.054 0.946 4 N -0.379 5.379 5 C -0.369 4.369 6 H 0.087 0.913 7 C -0.269 4.269 8 N -0.622 5.622 9 Si 0.801 3.199 10 H -0.194 1.194 11 H -0.219 1.219 12 H -0.220 1.220 13 C -0.138 4.138 14 C 0.048 3.952 15 O -0.396 6.396 16 C -0.212 4.212 17 C -0.193 4.193 18 H 0.087 0.913 19 H 0.061 0.939 20 H 0.049 0.951 21 H 0.209 0.791 22 H 0.059 0.941 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.245 0.755 26 H 0.130 0.870 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.962 2.715 -12.788 13.404 hybrid contribution 0.190 0.049 0.759 0.784 sum -2.772 2.765 -12.029 12.650 Atomic orbital electron populations 1.22154 0.97492 1.00474 1.00268 1.19661 0.92407 0.94156 0.84106 0.94559 1.42753 1.78761 1.09454 1.06886 1.19651 1.34758 0.93390 0.89067 0.91321 1.25515 1.03186 0.96897 1.01335 1.69822 1.53420 1.09595 1.29374 0.85087 0.76869 0.78107 0.79824 1.19354 1.21890 1.21988 1.21842 1.01686 0.93762 0.96485 1.21554 1.00374 0.80572 0.92688 1.86541 1.93165 1.18564 1.41301 1.23027 0.91091 1.04611 1.02499 1.22929 1.00783 0.92358 1.03240 0.91334 0.93860 0.95084 0.79104 0.94077 0.91553 0.91599 0.75509 0.87043 0.91594 0.90838 0.85750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.58 9.38 71.98 0.68 -4.91 15 2 C 0.20 8.92 2.66 44.99 0.12 9.04 15 3 H 0.04 1.74 7.50 -2.39 -0.02 1.72 15 4 N -0.74 -39.36 4.28 -322.94 -1.38 -40.74 15 5 C -0.24 -13.92 9.93 84.03 0.83 -13.08 15 6 H 0.07 3.96 7.83 -2.91 -0.02 3.94 15 7 C -0.08 -4.63 5.50 84.86 0.47 -4.16 15 8 N -0.97 -61.24 13.06 21.65 0.28 -60.96 15 9 Si 0.97 48.04 29.55 68.60 2.03 50.07 15 10 H -0.27 -12.62 7.11 99.48 0.71 -11.91 15 11 H -0.29 -14.28 7.11 99.48 0.71 -13.58 15 12 H -0.29 -14.38 7.11 99.48 0.71 -13.67 15 13 C -0.14 -4.74 1.95 -52.18 -0.10 -4.84 15 14 C 0.13 3.16 6.53 71.98 0.47 3.63 15 15 O -0.59 -15.55 12.69 -148.98 -1.89 -17.44 15 16 C -0.18 -6.27 9.42 30.60 0.29 -5.99 15 17 C -0.16 -5.08 9.51 30.60 0.29 -4.79 15 18 H 0.07 2.19 7.67 -2.39 -0.02 2.17 15 19 H 0.04 1.64 8.14 -2.38 -0.02 1.62 15 20 H 0.03 1.28 8.14 -2.39 -0.02 1.26 15 21 H 0.38 21.03 5.33 -92.71 -0.49 20.53 15 22 H 0.25 15.24 8.31 -92.71 -0.77 14.46 15 23 H 0.07 1.39 8.09 -2.39 -0.02 1.37 15 24 H 0.07 1.33 7.94 -2.39 -0.02 1.31 15 25 H 0.40 5.74 9.12 -74.05 -0.68 5.06 15 26 H 0.11 3.24 8.08 -2.39 -0.02 3.22 15 27 H 0.07 2.98 7.18 -2.39 -0.02 2.96 15 28 H 0.07 2.85 6.89 -2.39 -0.02 2.83 15 29 H 0.12 3.02 8.14 -2.39 -0.02 3.00 15 Total: -1.00 -69.91 244.15 2.05 -67.86 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: -0.03 Total: 26.32 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 3.04 Total: -25.11 kcal Atomic # 7 Polarization: -100.60 SS G_CDS: -1.10 Total: -101.70 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -1.89 Total: -17.44 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.07 kcal Total: -69.91 2.05 -67.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696095000.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.696 kcal (2) G-P(sol) polarization free energy of solvation -69.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds