Wall clock time and date at job start Mon Mar 30 2020 02:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09010 * 109.46573 * 2 1 4 4 N 1.46503 * 109.47449 * 240.00495 * 2 1 3 5 5 C 1.36933 * 120.00059 * 91.12202 * 4 2 1 6 6 H 1.07989 * 120.00577 * 0.02562 * 5 4 2 7 7 C 1.38818 * 119.99720 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99920 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00189 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47072 * 89.99743 * 9 7 5 11 11 H 1.48497 * 109.47299 * 209.99938 * 9 7 5 12 12 H 1.48506 * 109.46953 * 330.00223 * 9 7 5 13 13 C 1.52996 * 109.47539 * 119.99843 * 2 1 3 14 14 C 1.53006 * 115.55948 * 280.19177 * 13 2 1 15 15 O 1.42902 * 109.47096 * 320.10605 * 14 13 2 16 16 C 1.52999 * 117.50033 * 65.87725 * 13 2 1 17 17 C 1.53000 * 117.50112 * 134.50343 * 13 2 1 18 18 H 1.08995 * 109.47448 * 299.99788 * 1 2 3 19 19 H 1.09000 * 109.47203 * 60.00666 * 1 2 3 20 20 H 1.09010 * 109.46573 * 179.97438 * 1 2 3 21 21 H 0.97003 * 119.99488 * 271.12305 * 4 2 1 22 22 H 0.96997 * 120.00015 * 180.02562 * 8 7 5 23 23 H 1.08995 * 109.46717 * 80.11162 * 14 13 2 24 24 H 1.09006 * 109.46543 * 200.10752 * 14 13 2 25 25 H 0.96702 * 113.99627 * 180.02562 * 15 14 13 26 26 H 1.09010 * 117.49311 * 0.02562 * 16 13 2 27 27 H 1.08992 * 117.50407 * 214.98326 * 16 13 2 28 28 H 1.08995 * 117.50151 * 145.02210 * 17 13 2 29 29 H 1.09004 * 117.49433 * 359.97438 * 17 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.2686 0.0175 -2.3413 6 1 2.1063 1.0849 -2.3626 7 6 2.7309 -0.6369 -3.4749 8 7 2.9282 -1.9380 -3.4492 9 14 3.0715 0.3287 -5.0373 10 1 4.4816 0.7942 -5.0340 11 1 2.8404 -0.5421 -6.2177 12 1 2.1632 1.5018 -5.1021 13 6 2.0401 -0.7212 1.2492 14 6 2.0299 0.1035 2.5380 15 8 2.4433 1.4410 2.2509 16 6 1.7527 -2.2193 1.3669 17 6 3.1725 -1.7339 1.0674 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5137 -0.8900 20 1 -0.3633 -1.0278 -0.0005 21 1 2.1646 -1.6493 -1.1770 22 1 3.2516 -2.3952 -4.2411 23 1 1.0223 0.1157 2.9534 24 1 2.7151 -0.3417 3.2595 25 1 2.4608 2.0216 3.0240 26 1 1.2006 -2.6912 0.5540 27 1 1.5564 -2.6175 2.3623 28 1 3.9102 -1.8127 1.8659 29 1 3.5538 -1.8866 0.0577 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696095002.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:11 Heat of formation + Delta-G solvation = -15.431775 kcal Electronic energy + Delta-G solvation = -11708.979472 eV Core-core repulsion = 9633.353950 eV Total energy + Delta-G solvation = -2075.625522 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.57029 -35.76797 -33.70737 -31.26981 -28.46885 -26.41231 -23.98583 -21.89512 -21.60258 -18.06066 -17.29728 -17.03615 -15.13433 -14.83935 -14.17084 -13.64080 -13.15249 -12.64619 -12.38349 -12.28685 -11.64263 -11.13285 -10.84935 -10.76980 -10.60911 -10.26438 -10.04417 -9.97949 -9.53464 -9.40389 -9.14875 -8.73064 -6.85084 -5.67992 -2.94880 3.49703 3.54601 3.56337 4.16707 4.65213 4.68240 5.28201 5.35338 5.48647 5.56741 5.67029 5.74523 5.90981 6.09082 6.14781 6.32444 6.47781 6.58393 6.71323 6.79902 6.95817 7.07801 7.29316 7.80723 7.89145 8.52026 9.62299 10.21849 10.56744 11.55282 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.051054 B = 0.011599 C = 0.010847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.306855 B = 2413.508037 C = 2580.843146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.209 3.791 3 H 0.066 0.934 4 N -0.724 5.724 5 C -0.230 4.230 6 H 0.070 0.930 7 C -0.018 4.018 8 N -0.937 5.937 9 Si 0.906 3.094 10 H -0.291 1.291 11 H -0.293 1.293 12 H -0.283 1.283 13 C -0.131 4.131 14 C 0.120 3.880 15 O -0.561 6.561 16 C -0.173 4.173 17 C -0.166 4.166 18 H 0.034 0.966 19 H 0.050 0.950 20 H 0.043 0.957 21 H 0.383 0.617 22 H 0.254 0.746 23 H 0.043 0.957 24 H 0.039 0.961 25 H 0.370 0.630 26 H 0.098 0.902 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.358 2.368 11.789 12.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.099 3.901 3 H 0.084 0.916 4 N -0.366 5.366 5 C -0.361 4.361 6 H 0.088 0.912 7 C -0.213 4.213 8 N -0.587 5.587 9 Si 0.737 3.263 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.208 1.208 13 C -0.133 4.133 14 C 0.042 3.958 15 O -0.365 6.365 16 C -0.210 4.210 17 C -0.203 4.203 18 H 0.053 0.947 19 H 0.069 0.931 20 H 0.062 0.938 21 H 0.218 0.782 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.215 0.785 26 H 0.117 0.883 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.294 2.244 11.025 11.483 hybrid contribution 0.173 0.280 -0.260 0.419 sum -2.122 2.524 10.765 11.259 Atomic orbital electron populations 1.22359 0.99326 1.00434 0.99606 1.19572 0.91026 0.95675 0.83851 0.91576 1.42562 1.78440 1.07740 1.07855 1.19296 1.35732 0.91981 0.89134 0.91212 1.24711 1.02723 0.95738 0.98140 1.69656 1.52915 1.07058 1.29030 0.86192 0.77991 0.78722 0.83349 1.21844 1.21921 1.20846 1.21867 1.04516 0.90075 0.96798 1.21557 0.97142 0.82437 0.94683 1.86618 1.90917 1.21509 1.37437 1.22940 1.00367 0.95795 1.01928 1.23173 0.90788 1.02426 1.03885 0.94688 0.93064 0.93785 0.78202 0.93664 0.93840 0.94284 0.78451 0.88311 0.89907 0.90142 0.86590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 9.41 37.16 0.35 -2.75 15 2 C 0.21 4.55 2.85 -67.93 -0.19 4.36 15 3 H 0.07 1.56 7.02 -51.92 -0.36 1.20 15 4 N -0.72 -18.92 4.32 -53.43 -0.23 -19.15 15 5 C -0.23 -6.65 9.92 -15.06 -0.15 -6.80 15 6 H 0.07 1.98 7.83 -52.49 -0.41 1.57 15 7 C -0.02 -0.53 5.50 -17.43 -0.10 -0.62 15 8 N -0.94 -28.89 13.06 55.49 0.72 -28.17 15 9 Si 0.91 23.09 29.55 -169.99 -5.02 18.07 15 10 H -0.29 -7.39 7.11 56.52 0.40 -6.99 15 11 H -0.29 -7.49 7.11 56.52 0.40 -7.09 15 12 H -0.28 -7.03 7.11 56.52 0.40 -6.62 15 13 C -0.13 -2.40 1.93 -154.51 -0.30 -2.69 15 14 C 0.12 1.76 7.11 37.16 0.26 2.02 15 15 O -0.56 -8.53 12.46 -35.23 -0.44 -8.97 15 16 C -0.17 -2.90 9.16 -26.73 -0.24 -3.15 15 17 C -0.17 -3.07 9.36 -26.73 -0.25 -3.32 15 18 H 0.03 0.59 8.14 -51.93 -0.42 0.17 15 19 H 0.05 1.07 8.14 -51.93 -0.42 0.64 15 20 H 0.04 0.85 7.71 -51.92 -0.40 0.45 15 21 H 0.38 10.40 5.59 -40.82 -0.23 10.17 15 22 H 0.25 7.57 8.31 -40.82 -0.34 7.23 15 23 H 0.04 0.56 8.14 -51.93 -0.42 0.14 15 24 H 0.04 0.50 7.95 -51.93 -0.41 0.09 15 25 H 0.37 3.48 9.12 45.56 0.42 3.90 15 26 H 0.10 1.80 7.63 -51.92 -0.40 1.41 15 27 H 0.08 1.15 8.14 -51.93 -0.42 0.72 15 28 H 0.08 1.30 8.08 -51.93 -0.42 0.88 15 29 H 0.12 2.59 6.45 -51.93 -0.33 2.25 15 LS Contribution 244.20 15.07 3.68 3.68 Total: -1.00 -32.09 244.20 -5.28 -37.37 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -3.38 Total: 10.12 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -0.62 Total: -12.95 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.49 Total: -47.32 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -0.44 Total: -8.97 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -32.09 -5.28 -37.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696095002.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.943 kcal (2) G-P(sol) polarization free energy of solvation -32.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds