Wall clock time and date at job start Mon Mar 30 2020 02:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09010 * 109.46573 * 2 1 4 4 N 1.46503 * 109.47449 * 240.00495 * 2 1 3 5 5 C 1.36933 * 120.00059 * 91.12202 * 4 2 1 6 6 H 1.07989 * 120.00577 * 0.02562 * 5 4 2 7 7 C 1.38818 * 119.99720 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99920 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00189 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47072 * 89.99743 * 9 7 5 11 11 H 1.48497 * 109.47299 * 209.99938 * 9 7 5 12 12 H 1.48506 * 109.46953 * 330.00223 * 9 7 5 13 13 C 1.52996 * 109.47539 * 119.99843 * 2 1 3 14 14 C 1.53006 * 115.55948 * 280.19177 * 13 2 1 15 15 O 1.42902 * 109.47096 * 320.10605 * 14 13 2 16 16 C 1.52999 * 117.50033 * 65.87725 * 13 2 1 17 17 C 1.53000 * 117.50112 * 134.50343 * 13 2 1 18 18 H 1.08995 * 109.47448 * 299.99788 * 1 2 3 19 19 H 1.09000 * 109.47203 * 60.00666 * 1 2 3 20 20 H 1.09010 * 109.46573 * 179.97438 * 1 2 3 21 21 H 0.97003 * 119.99488 * 271.12305 * 4 2 1 22 22 H 0.96997 * 120.00015 * 180.02562 * 8 7 5 23 23 H 1.08995 * 109.46717 * 80.11162 * 14 13 2 24 24 H 1.09006 * 109.46543 * 200.10752 * 14 13 2 25 25 H 0.96702 * 113.99627 * 180.02562 * 15 14 13 26 26 H 1.09010 * 117.49311 * 0.02562 * 16 13 2 27 27 H 1.08992 * 117.50407 * 214.98326 * 16 13 2 28 28 H 1.08995 * 117.50151 * 145.02210 * 17 13 2 29 29 H 1.09004 * 117.49433 * 359.97438 * 17 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.2686 0.0175 -2.3413 6 1 2.1063 1.0849 -2.3626 7 6 2.7309 -0.6369 -3.4749 8 7 2.9282 -1.9380 -3.4492 9 14 3.0715 0.3287 -5.0373 10 1 4.4816 0.7942 -5.0340 11 1 2.8404 -0.5421 -6.2177 12 1 2.1632 1.5018 -5.1021 13 6 2.0401 -0.7212 1.2492 14 6 2.0299 0.1035 2.5380 15 8 2.4433 1.4410 2.2509 16 6 1.7527 -2.2193 1.3669 17 6 3.1725 -1.7339 1.0674 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5137 -0.8900 20 1 -0.3633 -1.0278 -0.0005 21 1 2.1646 -1.6493 -1.1770 22 1 3.2516 -2.3952 -4.2411 23 1 1.0223 0.1157 2.9534 24 1 2.7151 -0.3417 3.2595 25 1 2.4608 2.0216 3.0240 26 1 1.2006 -2.6912 0.5540 27 1 1.5564 -2.6175 2.3623 28 1 3.9102 -1.8127 1.8659 29 1 3.5538 -1.8866 0.0577 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696095002.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:11 Heat of formation + Delta-G solvation = -39.300842 kcal Electronic energy + Delta-G solvation = -11710.014512 eV Core-core repulsion = 9633.353950 eV Total energy + Delta-G solvation = -2076.660562 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.01568 -37.02620 -35.58757 -33.24646 -30.35698 -27.66354 -26.02910 -23.53664 -23.06691 -19.78730 -19.15972 -18.20043 -16.74512 -16.62344 -15.81776 -15.08243 -14.90561 -14.22648 -14.19961 -13.74966 -13.20077 -13.00100 -12.77676 -12.44380 -12.29833 -12.10809 -11.81202 -11.44278 -11.23813 -11.05405 -10.84444 -10.33529 -8.98002 -7.93374 -5.20251 1.45288 1.47581 1.55911 2.56534 2.85845 3.39296 3.51358 3.85678 4.00586 4.09448 4.28451 4.37859 4.57698 4.73087 4.79965 4.83901 4.96996 4.99353 5.18210 5.21893 5.40795 5.43897 5.53068 5.62249 6.30176 7.08214 7.35340 8.13792 8.37790 9.30412 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.051054 B = 0.011599 C = 0.010847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.306855 B = 2413.508037 C = 2580.843146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.201 3.799 3 H 0.044 0.956 4 N -0.735 5.735 5 C -0.237 4.237 6 H 0.069 0.931 7 C -0.078 4.078 8 N -0.971 5.971 9 Si 0.972 3.028 10 H -0.288 1.288 11 H -0.294 1.294 12 H -0.271 1.271 13 C -0.139 4.139 14 C 0.124 3.876 15 O -0.589 6.589 16 C -0.151 4.151 17 C -0.180 4.180 18 H 0.068 0.932 19 H 0.030 0.970 20 H 0.044 0.956 21 H 0.375 0.625 22 H 0.250 0.750 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.395 0.605 26 H 0.077 0.923 27 H 0.124 0.876 28 H 0.107 0.893 29 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.880 3.005 13.445 14.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.093 3.907 3 H 0.062 0.938 4 N -0.376 5.376 5 C -0.369 4.369 6 H 0.087 0.913 7 C -0.270 4.270 8 N -0.622 5.622 9 Si 0.801 3.199 10 H -0.215 1.215 11 H -0.220 1.220 12 H -0.196 1.196 13 C -0.140 4.140 14 C 0.046 3.954 15 O -0.397 6.397 16 C -0.188 4.188 17 C -0.218 4.218 18 H 0.086 0.914 19 H 0.050 0.950 20 H 0.063 0.937 21 H 0.208 0.792 22 H 0.059 0.941 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.244 0.756 26 H 0.095 0.905 27 H 0.142 0.858 28 H 0.125 0.875 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.836 2.924 12.730 13.366 hybrid contribution 0.330 0.119 -0.717 0.798 sum -2.505 3.042 12.013 12.643 Atomic orbital electron populations 1.22195 0.97488 1.00674 1.00259 1.19731 0.92273 0.94623 0.84118 0.93791 1.42727 1.78778 1.07417 1.08690 1.19628 1.34792 0.92166 0.90318 0.91332 1.25517 1.03402 0.96751 1.01317 1.69814 1.54266 1.08541 1.29600 0.85152 0.77850 0.77589 0.79284 1.21533 1.22009 1.19640 1.21896 1.04054 0.91107 0.96944 1.21578 0.99311 0.81838 0.92624 1.86552 1.91120 1.22280 1.39793 1.22950 0.98094 0.94524 1.03238 1.23063 0.92318 1.04146 1.02234 0.91361 0.95029 0.93676 0.79178 0.94095 0.91339 0.91789 0.75559 0.90485 0.85774 0.87512 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.60 9.41 71.98 0.68 -4.92 15 2 C 0.20 8.71 2.85 44.99 0.13 8.84 15 3 H 0.04 2.09 7.02 -2.38 -0.02 2.07 15 4 N -0.73 -39.32 4.32 -322.94 -1.39 -40.71 15 5 C -0.24 -13.97 9.92 84.04 0.83 -13.13 15 6 H 0.07 3.96 7.83 -2.92 -0.02 3.94 15 7 C -0.08 -4.67 5.50 84.86 0.47 -4.21 15 8 N -0.97 -61.35 13.06 21.65 0.28 -61.07 15 9 Si 0.97 48.13 29.55 68.60 2.03 50.16 15 10 H -0.29 -14.03 7.11 99.48 0.71 -13.33 15 11 H -0.29 -14.47 7.11 99.48 0.71 -13.77 15 12 H -0.27 -12.79 7.11 99.48 0.71 -12.08 15 13 C -0.14 -4.82 1.93 -52.18 -0.10 -4.92 15 14 C 0.12 3.18 7.11 71.98 0.51 3.69 15 15 O -0.59 -16.37 12.46 -148.98 -1.86 -18.22 15 16 C -0.15 -4.75 9.16 30.60 0.28 -4.47 15 17 C -0.18 -6.56 9.36 30.60 0.29 -6.28 15 18 H 0.07 2.13 8.14 -2.39 -0.02 2.11 15 19 H 0.03 1.29 8.14 -2.39 -0.02 1.27 15 20 H 0.04 1.69 7.71 -2.38 -0.02 1.67 15 21 H 0.37 21.09 5.59 -92.71 -0.52 20.57 15 22 H 0.25 15.29 8.31 -92.71 -0.77 14.52 15 23 H 0.07 1.43 8.14 -2.39 -0.02 1.41 15 24 H 0.06 1.34 7.95 -2.38 -0.02 1.33 15 25 H 0.39 6.18 9.12 -74.06 -0.68 5.51 15 26 H 0.08 2.77 7.63 -2.38 -0.02 2.75 15 27 H 0.12 2.89 8.14 -2.39 -0.02 2.87 15 28 H 0.11 3.24 8.08 -2.39 -0.02 3.23 15 29 H 0.07 3.20 6.45 -2.38 -0.02 3.18 15 Total: -1.00 -70.09 244.20 2.09 -68.00 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: -0.05 Total: 27.25 kcal Atomic # 6 Polarization: -28.49 SS G_CDS: 3.08 Total: -25.40 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -1.11 Total: -101.78 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -1.86 Total: -18.22 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.03 Total: 50.16 kcal Total: -70.09 2.09 -68.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696095002.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.701 kcal (2) G-P(sol) polarization free energy of solvation -70.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds