Wall clock time and date at job start Mon Mar 30 2020 02:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 108.99508 * 2 1 4 4 C 1.51044 * 109.06050 * 241.02466 * 2 1 3 5 5 O 1.43454 * 107.56384 * 145.44575 * 4 2 1 6 6 C 1.36609 * 117.83790 * 82.08480 * 5 4 2 7 7 C 1.54714 * 110.79361 * 298.96308 * 6 5 4 8 8 C 1.50975 * 109.08048 * 73.34391 * 7 6 5 9 9 H 1.09012 * 108.65668 * 28.83736 * 8 7 6 10 10 C 1.50707 * 108.74940 * 147.01353 * 8 7 6 11 11 H 1.07990 * 119.99947 * 3.60609 * 10 8 7 12 12 C 1.37877 * 119.99700 * 183.59836 * 10 8 7 13 13 N 1.31517 * 120.00534 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 119.99715 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47354 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47107 * 120.00502 * 14 12 10 17 17 H 1.48504 * 109.47226 * 240.00105 * 14 12 10 18 18 N 1.47403 * 109.06161 * 118.97321 * 2 1 3 19 19 H 1.08995 * 109.46967 * 301.02486 * 1 2 3 20 20 H 1.08996 * 109.47004 * 61.02707 * 1 2 3 21 21 H 1.09006 * 109.46993 * 181.03141 * 1 2 3 22 22 H 1.08996 * 109.83980 * 25.93313 * 4 2 1 23 23 H 1.08999 * 109.89859 * 264.98950 * 4 2 1 24 24 H 1.09002 * 109.21374 * 178.62304 * 6 5 4 25 25 H 1.09003 * 109.20968 * 59.29744 * 6 5 4 26 26 H 1.08995 * 109.53312 * 313.46625 * 7 6 5 27 27 H 1.09005 * 109.60159 * 193.26742 * 7 6 5 28 28 H 0.96991 * 120.00445 * 179.97438 * 13 12 10 29 29 H 1.00901 * 111.00015 * 35.63407 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8848 1.0307 0.0000 4 6 2.0233 -0.6916 -1.2489 5 8 3.2293 -0.0330 -1.6609 6 6 4.3943 -0.3908 -1.0436 7 6 4.3230 -0.1011 0.4745 8 6 3.4206 -1.1190 1.1293 9 1 3.4608 -2.0430 0.5523 10 6 3.9309 -1.3950 2.5202 11 1 4.7764 -0.8440 2.9044 12 6 3.3180 -2.3510 3.3022 13 7 2.2885 -3.0224 2.8342 14 14 3.9500 -2.6927 5.0265 15 1 5.1092 -1.8097 5.3129 16 1 2.8706 -2.4267 6.0111 17 1 4.3724 -4.1128 5.1266 18 7 2.0114 -0.6749 1.2188 19 1 -0.3633 0.5296 0.8806 20 1 -0.3633 0.4978 -0.8990 21 1 -0.3633 -1.0276 0.0185 22 1 1.2726 -0.6146 -2.0354 23 1 2.2290 -1.7405 -1.0355 24 1 5.2188 0.1744 -1.4784 25 1 4.5695 -1.4555 -1.1978 26 1 3.9216 0.8993 0.6361 27 1 5.3215 -0.1675 0.9067 28 1 1.8576 -3.6952 3.3842 29 1 1.4059 -1.4417 1.4707 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709894990.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:39 Heat of formation + Delta-G solvation = -48.543848 kcal Electronic energy + Delta-G solvation = -12068.589663 eV Core-core repulsion = 9991.528294 eV Total energy + Delta-G solvation = -2077.061369 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.09778 -35.08114 -33.33799 -31.40262 -27.98891 -26.43872 -25.50876 -22.55766 -20.82946 -18.80945 -16.60304 -15.83343 -15.52870 -14.73330 -14.56925 -14.18348 -13.21521 -12.60647 -12.40862 -11.86917 -11.52191 -11.36997 -10.96442 -10.78509 -10.56252 -10.39405 -10.31190 -9.97898 -9.57655 -9.23359 -8.67524 -8.49470 -6.72314 -6.06452 -4.07041 3.29976 3.38142 3.42344 4.39390 4.44418 5.12830 5.52200 5.63792 5.71398 5.84012 5.90717 6.02505 6.08065 6.15937 6.28442 6.37007 6.69434 6.70708 6.81182 6.92480 6.99843 7.51210 7.89966 8.09919 8.29119 8.68135 9.05814 9.10376 9.60178 11.05442 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.050623 B = 0.013946 C = 0.011813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.971050 B = 2007.295733 C = 2369.614157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 H 0.072 0.928 4 C 0.040 3.960 5 O -0.393 6.393 6 C 0.070 3.930 7 C -0.150 4.150 8 C 0.213 3.787 9 H -0.005 1.005 10 C -0.501 4.501 11 H 0.059 0.941 12 C 0.068 3.932 13 N -0.899 5.899 14 Si 0.896 3.104 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.286 1.286 18 N -0.681 5.681 19 H 0.060 0.940 20 H 0.049 0.951 21 H 0.050 0.950 22 H 0.081 0.919 23 H 0.054 0.946 24 H 0.079 0.921 25 H 0.030 0.970 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.261 0.739 29 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.813 3.101 -5.537 6.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.062 4.062 3 H 0.090 0.910 4 C -0.038 4.038 5 O -0.312 6.312 6 C -0.008 4.008 7 C -0.189 4.189 8 C 0.106 3.894 9 H 0.012 0.988 10 C -0.540 4.540 11 H 0.077 0.923 12 C -0.134 4.134 13 N -0.539 5.539 14 Si 0.725 3.275 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.212 1.212 18 N -0.318 5.318 19 H 0.079 0.921 20 H 0.068 0.932 21 H 0.069 0.931 22 H 0.099 0.901 23 H 0.072 0.928 24 H 0.097 0.903 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.765 3.657 -5.320 6.501 hybrid contribution 0.139 -1.285 0.671 1.456 sum -0.626 2.372 -4.649 5.257 Atomic orbital electron populations 1.21886 0.95808 1.01434 1.01195 1.22027 0.94115 0.99805 0.90259 0.91029 1.23286 0.85862 0.96698 0.97920 1.86285 1.15526 1.65697 1.63655 1.21933 0.86387 0.98478 0.93963 1.22429 1.01207 1.01029 0.94201 1.18842 0.84422 0.90531 0.95580 0.98782 1.21295 1.14000 1.19206 0.99455 0.92317 1.24991 0.94720 0.95401 0.98263 1.69709 1.22124 1.24991 1.37055 0.86474 0.78784 0.77731 0.84540 1.19827 1.20989 1.21220 1.60899 1.05511 1.36645 1.28752 0.92135 0.93155 0.93095 0.90121 0.92788 0.90306 0.95173 0.91889 0.91362 0.92897 0.81909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 8.99 37.16 0.33 -2.11 15 2 C 0.05 0.98 2.75 -68.42 -0.19 0.79 15 3 H 0.07 1.49 7.25 -51.93 -0.38 1.11 15 4 C 0.04 0.76 6.01 36.17 0.22 0.97 15 5 O -0.39 -7.73 9.95 -21.71 -0.22 -7.95 15 6 C 0.07 1.35 6.43 38.06 0.24 1.59 15 7 C -0.15 -3.28 5.18 -26.85 -0.14 -3.42 15 8 C 0.21 5.40 1.90 -69.26 -0.13 5.27 15 9 H -0.01 -0.15 6.53 -51.92 -0.34 -0.49 15 10 C -0.50 -13.92 8.57 -34.44 -0.30 -14.22 15 11 H 0.06 1.62 7.48 -52.49 -0.39 1.23 15 12 C 0.07 1.88 5.38 -17.82 -0.10 1.78 15 13 N -0.90 -25.39 11.62 55.43 0.64 -24.74 15 14 Si 0.90 21.45 29.54 -169.99 -5.02 16.42 15 15 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 18 N -0.68 -16.52 6.20 -101.90 -0.63 -17.15 15 19 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 20 H 0.05 0.71 8.05 -51.93 -0.42 0.29 15 21 H 0.05 0.85 8.12 -51.93 -0.42 0.43 15 22 H 0.08 1.30 7.69 -51.93 -0.40 0.91 15 23 H 0.05 1.12 6.78 -51.93 -0.35 0.77 15 24 H 0.08 1.30 8.14 -51.93 -0.42 0.87 15 25 H 0.03 0.59 7.72 -51.93 -0.40 0.19 15 26 H 0.06 1.40 7.24 -51.93 -0.38 1.02 15 27 H 0.07 1.45 7.54 -51.93 -0.39 1.06 15 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 15 29 H 0.36 9.25 6.69 -39.29 -0.26 8.99 15 LS Contribution 229.51 15.07 3.46 3.46 Total: -1.00 -28.55 229.51 -5.93 -34.48 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -4.11 Total: 4.83 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -0.05 Total: -9.34 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.01 Total: -41.90 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.22 Total: -7.95 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -28.55 -5.93 -34.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709894990.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.067 kcal (2) G-P(sol) polarization free energy of solvation -28.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds