Wall clock time and date at job start Mon Mar 30 2020 02:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 108.99508 * 2 1 4 4 C 1.51044 * 109.06050 * 241.02466 * 2 1 3 5 5 O 1.43454 * 107.56384 * 145.44575 * 4 2 1 6 6 C 1.36609 * 117.83790 * 82.08480 * 5 4 2 7 7 C 1.54714 * 110.79361 * 298.96308 * 6 5 4 8 8 C 1.50975 * 109.08048 * 73.34391 * 7 6 5 9 9 H 1.09012 * 108.65668 * 28.83736 * 8 7 6 10 10 C 1.50707 * 108.74940 * 147.01353 * 8 7 6 11 11 H 1.07990 * 119.99947 * 3.60609 * 10 8 7 12 12 C 1.37877 * 119.99700 * 183.59836 * 10 8 7 13 13 N 1.31517 * 120.00534 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 119.99715 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47354 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47107 * 120.00502 * 14 12 10 17 17 H 1.48504 * 109.47226 * 240.00105 * 14 12 10 18 18 N 1.47403 * 109.06161 * 118.97321 * 2 1 3 19 19 H 1.08995 * 109.46967 * 301.02486 * 1 2 3 20 20 H 1.08996 * 109.47004 * 61.02707 * 1 2 3 21 21 H 1.09006 * 109.46993 * 181.03141 * 1 2 3 22 22 H 1.08996 * 109.83980 * 25.93313 * 4 2 1 23 23 H 1.08999 * 109.89859 * 264.98950 * 4 2 1 24 24 H 1.09002 * 109.21374 * 178.62304 * 6 5 4 25 25 H 1.09003 * 109.20968 * 59.29744 * 6 5 4 26 26 H 1.08995 * 109.53312 * 313.46625 * 7 6 5 27 27 H 1.09005 * 109.60159 * 193.26742 * 7 6 5 28 28 H 0.96991 * 120.00445 * 179.97438 * 13 12 10 29 29 H 1.00901 * 111.00015 * 35.63407 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8848 1.0307 0.0000 4 6 2.0233 -0.6916 -1.2489 5 8 3.2293 -0.0330 -1.6609 6 6 4.3943 -0.3908 -1.0436 7 6 4.3230 -0.1011 0.4745 8 6 3.4206 -1.1190 1.1293 9 1 3.4608 -2.0430 0.5523 10 6 3.9309 -1.3950 2.5202 11 1 4.7764 -0.8440 2.9044 12 6 3.3180 -2.3510 3.3022 13 7 2.2885 -3.0224 2.8342 14 14 3.9500 -2.6927 5.0265 15 1 5.1092 -1.8097 5.3129 16 1 2.8706 -2.4267 6.0111 17 1 4.3724 -4.1128 5.1266 18 7 2.0114 -0.6749 1.2188 19 1 -0.3633 0.5296 0.8806 20 1 -0.3633 0.4978 -0.8990 21 1 -0.3633 -1.0276 0.0185 22 1 1.2726 -0.6146 -2.0354 23 1 2.2290 -1.7405 -1.0355 24 1 5.2188 0.1744 -1.4784 25 1 4.5695 -1.4555 -1.1978 26 1 3.9216 0.8993 0.6361 27 1 5.3215 -0.1675 0.9067 28 1 1.8576 -3.6952 3.3842 29 1 1.4059 -1.4417 1.4707 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709894990.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:38 Heat of formation + Delta-G solvation = -68.655197 kcal Electronic energy + Delta-G solvation = -12069.461756 eV Core-core repulsion = 9991.528294 eV Total energy + Delta-G solvation = -2077.933462 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.72407 -36.82783 -35.12667 -33.34742 -29.63200 -28.25171 -27.24669 -24.32609 -22.51056 -20.58727 -18.60321 -17.41480 -17.23376 -16.44927 -16.44208 -15.96595 -14.92931 -14.23493 -14.13963 -13.46855 -13.29533 -13.07503 -12.84982 -12.42840 -12.23105 -12.14926 -12.04983 -11.65151 -11.55384 -11.01427 -10.58474 -10.39216 -8.61409 -8.15969 -6.24547 1.40118 1.42786 1.53759 2.42990 2.89609 3.09299 3.84062 4.07724 4.11549 4.24888 4.32877 4.45754 4.54512 4.69812 4.79205 4.84802 5.01070 5.10013 5.18221 5.28655 5.35225 5.52717 5.78474 6.24615 6.50913 6.68880 7.05928 7.15053 7.46716 8.94540 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.050623 B = 0.013946 C = 0.011813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.971050 B = 2007.295733 C = 2369.614157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.045 3.955 3 H 0.067 0.933 4 C 0.044 3.956 5 O -0.393 6.393 6 C 0.075 3.925 7 C -0.145 4.145 8 C 0.215 3.785 9 H -0.039 1.039 10 C -0.528 4.528 11 H 0.053 0.947 12 C 0.021 3.979 13 N -0.920 5.920 14 Si 0.960 3.040 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.280 1.280 18 N -0.695 5.695 19 H 0.056 0.944 20 H 0.084 0.916 21 H 0.048 0.952 22 H 0.117 0.883 23 H 0.030 0.970 24 H 0.114 0.886 25 H 0.023 0.977 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.263 0.737 29 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.914 3.738 -5.998 7.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.065 4.065 3 H 0.085 0.915 4 C -0.034 4.034 5 O -0.312 6.312 6 C -0.002 4.002 7 C -0.184 4.184 8 C 0.108 3.892 9 H -0.021 1.021 10 C -0.567 4.567 11 H 0.071 0.929 12 C -0.178 4.178 13 N -0.561 5.561 14 Si 0.786 3.214 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.206 1.206 18 N -0.330 5.330 19 H 0.075 0.925 20 H 0.103 0.897 21 H 0.067 0.933 22 H 0.135 0.865 23 H 0.049 0.951 24 H 0.132 0.868 25 H 0.041 0.959 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.862 4.309 -5.795 7.273 hybrid contribution 0.154 -1.470 0.791 1.676 sum -0.709 2.840 -5.004 5.797 Atomic orbital electron populations 1.21825 0.93111 1.01773 1.02774 1.22107 0.96399 0.98798 0.89197 0.91543 1.23306 0.86464 0.95037 0.98562 1.86296 1.15716 1.65685 1.63467 1.21954 0.87402 0.98742 0.92150 1.22351 1.00314 0.99535 0.96153 1.18769 0.85811 0.90338 0.94310 1.02108 1.21651 1.14340 1.19752 1.00942 0.92858 1.25740 0.94957 0.95225 1.01880 1.69818 1.22816 1.25196 1.38237 0.85484 0.78250 0.77686 0.79970 1.19406 1.20723 1.20599 1.60769 1.04758 1.35897 1.31617 0.92516 0.89696 0.93271 0.86510 0.95115 0.86784 0.95896 0.92320 0.91217 0.92772 0.83334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.32 8.99 71.98 0.65 -3.68 15 2 C 0.05 1.77 2.75 44.18 0.12 1.89 15 3 H 0.07 2.67 7.25 -2.39 -0.02 2.65 15 4 C 0.04 1.58 6.01 71.34 0.43 2.01 15 5 O -0.39 -14.66 9.95 -100.61 -1.00 -15.66 15 6 C 0.08 2.78 6.43 72.57 0.47 3.24 15 7 C -0.15 -6.29 5.18 30.52 0.16 -6.14 15 8 C 0.21 11.08 1.90 43.30 0.08 11.16 15 9 H -0.04 -2.20 6.53 -2.38 -0.02 -2.21 15 10 C -0.53 -29.79 8.57 25.60 0.22 -29.57 15 11 H 0.05 2.97 7.48 -2.92 -0.02 2.95 15 12 C 0.02 1.19 5.38 84.65 0.46 1.64 15 13 N -0.92 -52.65 11.62 21.45 0.25 -52.40 15 14 Si 0.96 44.17 29.54 68.60 2.03 46.20 15 15 H -0.27 -12.11 7.11 99.48 0.71 -11.41 15 16 H -0.28 -12.76 7.11 99.48 0.71 -12.05 15 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 15 18 N -0.69 -34.00 6.20 -476.30 -2.95 -36.95 15 19 H 0.06 1.82 8.14 -2.39 -0.02 1.80 15 20 H 0.08 2.09 8.05 -2.39 -0.02 2.07 15 21 H 0.05 1.56 8.12 -2.38 -0.02 1.54 15 22 H 0.12 3.40 7.69 -2.39 -0.02 3.38 15 23 H 0.03 1.27 6.78 -2.39 -0.02 1.25 15 24 H 0.11 3.42 8.14 -2.39 -0.02 3.40 15 25 H 0.02 0.88 7.72 -2.39 -0.02 0.86 15 26 H 0.06 2.56 7.24 -2.39 -0.02 2.55 15 27 H 0.07 2.94 7.54 -2.38 -0.02 2.93 15 28 H 0.26 14.27 8.31 -92.72 -0.77 13.49 15 29 H 0.35 18.19 6.69 -89.69 -0.60 17.59 15 Total: -1.00 -60.73 229.51 1.43 -59.30 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 0.53 Total: 18.96 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: 2.58 Total: -19.43 kcal Atomic # 7 Polarization: -86.65 SS G_CDS: -2.70 Total: -89.35 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -1.00 Total: -15.66 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -60.73 1.43 -59.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709894990.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.357 kcal (2) G-P(sol) polarization free energy of solvation -60.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds