Wall clock time and date at job start Mon Mar 30 2020 02:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.22503 * 2 1 4 4 C 1.55195 * 109.25539 * 240.54560 * 2 1 3 5 5 C 1.54796 * 108.79519 * 201.79390 * 4 2 1 6 6 N 1.43423 * 116.57908 * 319.48861 * 5 4 2 7 7 C 1.36934 * 120.63656 * 269.49828 * 6 5 4 8 8 H 1.07991 * 120.00313 * 29.89529 * 7 6 5 9 9 C 1.38820 * 119.99737 * 209.90133 * 7 6 5 10 10 N 1.31622 * 119.99964 * 25.24211 * 9 7 6 11 11 Si 1.86798 * 119.99846 * 205.24649 * 9 7 6 12 12 H 1.48499 * 109.47160 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47121 * 240.00023 * 11 9 7 14 14 H 1.48494 * 109.47473 * 119.99722 * 11 9 7 15 15 C 1.50116 * 118.72597 * 89.22038 * 6 5 4 16 16 C 1.46914 * 106.78267 * 291.62031 * 15 6 5 17 17 O 1.39641 * 109.25695 * 119.46481 * 2 1 3 18 18 H 1.08993 * 109.46963 * 300.53872 * 1 2 3 19 19 H 1.08999 * 109.46632 * 60.53536 * 1 2 3 20 20 H 1.08994 * 109.46902 * 180.53882 * 1 2 3 21 21 H 1.08998 * 109.57268 * 321.67928 * 4 2 1 22 22 H 1.08998 * 109.56665 * 82.04976 * 4 2 1 23 23 H 1.09004 * 107.83745 * 197.72494 * 5 4 2 24 24 H 1.08991 * 108.05563 * 81.43218 * 5 4 2 25 25 H 0.96994 * 120.00002 * 4.98917 * 10 9 7 26 26 H 1.09008 * 109.98873 * 50.94029 * 15 6 5 27 27 H 1.09004 * 109.98919 * 172.20686 * 15 6 5 28 28 H 1.09001 * 108.62235 * 177.92118 * 16 15 6 29 29 H 1.08999 * 108.61898 * 295.69104 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8889 1.0292 0.0000 4 6 2.0418 -0.7205 -1.2758 5 6 3.4908 -1.2051 -1.0275 6 7 4.3545 -0.3078 -0.3161 7 6 5.1192 0.6062 -0.9906 8 1 4.7752 1.0085 -1.9319 9 6 6.3368 1.0157 -0.4643 10 7 6.9948 0.2294 0.3610 11 14 7.0411 2.6827 -0.9274 12 1 6.1150 3.3686 -1.8639 13 1 8.3604 2.4976 -1.5836 14 1 7.2083 3.5068 0.2965 15 6 4.3995 -0.3858 1.1823 16 6 3.0952 0.0820 1.6707 17 8 1.9905 -0.6484 1.1478 18 1 -0.3633 0.5221 0.8851 19 1 -0.3632 0.5055 -0.8948 20 1 -0.3633 -1.0276 0.0097 21 1 1.4016 -1.5751 -1.4942 22 1 2.0281 -0.0273 -2.1168 23 1 3.9435 -1.4145 -1.9967 24 1 3.4433 -2.1417 -0.4722 25 1 6.6660 -0.6643 0.5451 26 1 4.5677 -1.4158 1.4970 27 1 5.1939 0.2549 1.5651 28 1 3.0817 0.0026 2.7578 29 1 2.9782 1.1313 1.4000 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720455542.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:42 Heat of formation + Delta-G solvation = -44.347784 kcal Electronic energy + Delta-G solvation = -12154.139514 eV Core-core repulsion = 10077.260100 eV Total energy + Delta-G solvation = -2076.879414 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.70258 -37.15967 -34.51091 -33.32238 -30.45834 -29.08584 -25.91317 -24.41063 -22.58945 -21.41355 -19.39230 -17.49153 -16.83004 -16.66368 -16.00583 -15.56797 -14.93669 -14.50307 -13.98872 -13.88333 -13.54493 -13.23177 -12.63841 -12.58536 -12.41968 -11.96930 -11.89180 -11.70025 -11.58490 -11.24505 -10.50315 -10.42168 -8.94771 -8.30217 -5.47376 1.58086 1.65194 1.82000 2.62893 3.03766 3.13318 3.43103 3.94716 4.13208 4.22442 4.23723 4.49959 4.55978 4.67774 4.68837 4.80319 4.87154 5.03038 5.07189 5.08546 5.11084 5.27476 5.33181 5.84544 6.32926 6.34859 7.03241 7.70868 8.21781 8.94802 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.055319 B = 0.013447 C = 0.012911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.035312 B = 2081.805842 C = 2168.127644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.081 3.919 3 H 0.045 0.955 4 C -0.154 4.154 5 C 0.156 3.844 6 N -0.612 5.612 7 C -0.356 4.356 8 H 0.047 0.953 9 C -0.073 4.073 10 N -0.937 5.937 11 Si 1.118 2.882 12 H -0.275 1.275 13 H -0.291 1.291 14 H -0.283 1.283 15 C 0.108 3.892 16 C 0.052 3.948 17 O -0.367 6.367 18 H 0.062 0.938 19 H 0.079 0.921 20 H 0.064 0.936 21 H 0.082 0.918 22 H 0.058 0.942 23 H 0.021 0.979 24 H 0.023 0.977 25 H 0.255 0.745 26 H 0.028 0.972 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.342 1.193 0.068 10.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.022 3.978 3 H 0.063 0.937 4 C -0.194 4.194 5 C 0.028 3.972 6 N -0.336 5.336 7 C -0.485 4.485 8 H 0.064 0.936 9 C -0.269 4.269 10 N -0.578 5.578 11 Si 0.943 3.057 12 H -0.200 1.200 13 H -0.218 1.218 14 H -0.209 1.209 15 C -0.016 4.016 16 C -0.026 4.026 17 O -0.285 6.285 18 H 0.081 0.919 19 H 0.098 0.902 20 H 0.083 0.917 21 H 0.100 0.900 22 H 0.077 0.923 23 H 0.040 0.960 24 H 0.041 0.959 25 H 0.065 0.935 26 H 0.046 0.954 27 H 0.092 0.908 28 H 0.108 0.892 29 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.175 2.062 0.409 9.413 hybrid contribution -0.783 -1.156 -0.501 1.484 sum -9.958 0.905 -0.092 10.000 Atomic orbital electron populations 1.21957 0.92364 1.02935 1.02824 1.22150 0.95297 0.94756 0.85553 0.93738 1.23395 0.97533 1.00875 0.97633 1.20305 0.90756 0.91503 0.94643 1.44195 1.47265 1.41058 1.01092 1.20149 1.00731 1.20033 1.07583 0.93565 1.27218 0.92892 1.07552 0.99249 1.70850 1.38372 1.08459 1.40133 0.82820 0.75059 0.71790 0.76077 1.20034 1.21758 1.20936 1.21117 0.97255 0.98914 0.84282 1.21877 0.87484 0.94774 0.98464 1.87547 1.46713 1.52334 1.41901 0.91876 0.90166 0.91662 0.89981 0.92276 0.96008 0.95866 0.93526 0.95406 0.90806 0.89200 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 9.45 71.98 0.68 -3.05 15 2 C 0.08 2.84 2.82 31.35 0.09 2.93 15 3 H 0.04 1.72 6.66 -2.39 -0.02 1.70 15 4 C -0.15 -5.58 6.14 31.96 0.20 -5.38 15 5 C 0.16 7.05 5.28 87.56 0.46 7.51 15 6 N -0.61 -31.67 2.42 -707.11 -1.71 -33.38 15 7 C -0.36 -20.12 9.47 84.04 0.80 -19.33 15 8 H 0.05 2.65 7.95 -2.92 -0.02 2.63 15 9 C -0.07 -4.12 4.77 84.86 0.40 -3.72 15 10 N -0.94 -56.79 12.26 21.65 0.27 -56.53 15 11 Si 1.12 50.69 29.99 68.60 2.06 52.75 15 12 H -0.28 -11.59 7.11 99.48 0.71 -10.88 15 13 H -0.29 -13.01 7.11 99.48 0.71 -12.30 15 14 H -0.28 -12.47 7.11 99.48 0.71 -11.77 15 15 C 0.11 5.21 4.91 83.78 0.41 5.62 15 16 C 0.05 2.07 6.01 70.09 0.42 2.49 15 17 O -0.37 -14.15 9.85 -137.19 -1.35 -15.50 15 18 H 0.06 1.52 8.14 -2.39 -0.02 1.50 15 19 H 0.08 1.77 8.14 -2.39 -0.02 1.76 15 20 H 0.06 1.60 8.14 -2.39 -0.02 1.58 15 21 H 0.08 2.55 7.98 -2.39 -0.02 2.53 15 22 H 0.06 2.11 8.14 -2.39 -0.02 2.09 15 23 H 0.02 1.02 7.98 -2.39 -0.02 1.00 15 24 H 0.02 1.04 7.99 -2.39 -0.02 1.02 15 25 H 0.25 15.84 6.94 -92.71 -0.64 15.20 15 26 H 0.03 1.33 8.14 -2.38 -0.02 1.31 15 27 H 0.07 3.92 5.85 -2.39 -0.01 3.90 15 28 H 0.09 3.08 8.14 -2.39 -0.02 3.06 15 29 H 0.05 1.92 6.77 -2.39 -0.02 1.90 15 Total: -1.00 -63.31 231.65 3.96 -59.35 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: 1.23 Total: 6.23 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 3.46 Total: -12.92 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -1.44 Total: -89.91 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -1.35 Total: -15.50 kcal Atomic # 14 Polarization: 50.69 SS G_CDS: 2.06 Total: 52.75 kcal Total: -63.31 3.96 -59.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720455542.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.002 kcal (2) G-P(sol) polarization free energy of solvation -63.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds