Wall clock time and date at job start Mon Mar 30 2020 02:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 114.00065 * 2 1 4 4 H 1.08996 * 112.84798 * 18.80288 * 3 2 1 5 5 C 1.53780 * 113.61276 * 247.49508 * 3 2 1 6 6 C 1.53951 * 87.11048 * 220.09214 * 5 3 2 7 7 C 1.53777 * 87.02284 * 25.36277 * 6 5 3 8 8 H 1.09000 * 113.61332 * 89.22470 * 7 6 5 9 9 N 1.46496 * 113.61793 * 220.04746 * 7 6 5 10 10 C 1.46503 * 120.00022 * 39.13626 * 9 7 6 11 11 C 1.36943 * 119.99971 * 219.13457 * 9 7 6 12 12 H 1.07996 * 119.99742 * 340.03474 * 11 9 7 13 13 C 1.38811 * 119.99882 * 160.03239 * 11 9 7 14 14 N 1.31623 * 120.00027 * 344.10822 * 13 11 9 15 15 Si 1.86795 * 120.00020 * 164.10793 * 13 11 9 16 16 H 1.48496 * 109.47293 * 84.88984 * 15 13 11 17 17 H 1.48499 * 109.47123 * 324.89040 * 15 13 11 18 18 H 1.48501 * 109.47293 * 204.89471 * 15 13 11 19 19 H 1.08999 * 109.46889 * 300.00175 * 1 2 3 20 20 H 1.08997 * 109.46680 * 60.00117 * 1 2 3 21 21 H 1.09003 * 109.47173 * 179.97438 * 1 2 3 22 22 H 1.08993 * 113.61762 * 334.56935 * 5 3 2 23 23 H 1.09005 * 113.61184 * 105.38954 * 5 3 2 24 24 H 1.09005 * 113.61640 * 270.84411 * 6 5 3 25 25 H 1.09002 * 113.66912 * 139.89270 * 6 5 3 26 26 H 1.08991 * 109.46788 * 265.46275 * 10 9 7 27 27 H 1.08995 * 109.46946 * 25.46914 * 10 9 7 28 28 H 1.09003 * 109.47018 * 145.46254 * 10 9 7 29 29 H 0.97003 * 120.00107 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3138 2.0788 0.3237 5 6 2.7535 1.6488 -1.3017 6 6 3.8254 2.3173 -0.4218 7 6 3.3756 1.3718 0.7046 8 1 3.9082 0.4208 0.7151 9 7 3.3257 2.0105 2.0220 10 6 2.8379 3.3858 2.1514 11 6 3.7350 1.3218 3.1327 12 1 3.7855 0.2433 3.1111 13 6 4.0850 2.0101 4.2862 14 7 4.3277 3.3027 4.2333 15 14 4.2115 1.1020 5.9137 16 1 5.5597 0.4919 6.0366 17 1 3.1790 0.0360 5.9672 18 1 3.9962 2.0562 7.0310 19 1 -0.3633 0.5139 0.8900 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 3.1167 0.7740 -1.8410 23 1 2.2135 2.3465 -1.9418 24 1 3.6266 3.3688 -0.2145 25 1 4.8453 2.1373 -0.7617 26 1 3.6825 4.0743 2.1298 27 1 2.1639 3.6114 1.3250 28 1 2.3042 3.4948 3.0956 29 1 4.5726 3.7837 5.0393 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724155240.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:45 Heat of formation + Delta-G solvation = -0.244565 kcal Electronic energy + Delta-G solvation = -11801.830406 eV Core-core repulsion = 9726.863451 eV Total energy + Delta-G solvation = -2074.966955 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.86965 -35.86241 -33.84946 -30.44327 -26.62297 -25.98225 -24.73226 -23.72980 -21.45112 -18.50797 -17.02047 -16.06457 -15.37203 -14.61392 -14.49669 -13.89326 -13.12295 -12.73030 -12.38954 -11.83720 -11.48112 -11.11677 -10.99576 -10.80562 -10.57465 -10.44138 -10.33808 -10.11015 -9.72308 -9.59610 -8.97430 -8.44006 -6.72629 -5.69675 -3.11947 3.41677 3.47614 3.51163 4.34409 4.58194 5.23451 5.29221 5.42773 5.45633 5.65480 5.73169 5.79035 5.92179 5.94967 6.04666 6.23946 6.42138 6.57281 6.73155 6.83216 6.99886 7.38279 7.71205 7.82721 7.86944 8.41953 9.26964 9.90924 10.39063 11.35715 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.048016 B = 0.012571 C = 0.011020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.001754 B = 2226.781830 C = 2540.234353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.377 6.377 3 C 0.035 3.965 4 H 0.080 0.920 5 C -0.156 4.156 6 C -0.159 4.159 7 C 0.171 3.829 8 H 0.090 0.910 9 N -0.585 5.585 10 C 0.162 3.838 11 C -0.254 4.254 12 H 0.071 0.929 13 C -0.001 4.001 14 N -0.909 5.909 15 Si 0.904 3.096 16 H -0.286 1.286 17 H -0.281 1.281 18 H -0.290 1.290 19 H 0.039 0.961 20 H 0.031 0.969 21 H 0.075 0.925 22 H 0.081 0.919 23 H 0.058 0.942 24 H 0.080 0.920 25 H 0.065 0.935 26 H 0.031 0.969 27 H -0.002 1.002 28 H 0.043 0.957 29 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.086 -2.226 -7.916 9.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.296 6.296 3 C -0.026 4.026 4 H 0.098 0.902 5 C -0.195 4.195 6 C -0.199 4.199 7 C 0.061 3.939 8 H 0.108 0.892 9 N -0.304 5.304 10 C 0.017 3.983 11 C -0.384 4.384 12 H 0.089 0.911 13 C -0.198 4.198 14 N -0.554 5.554 15 Si 0.734 3.266 16 H -0.213 1.213 17 H -0.206 1.206 18 H -0.216 1.216 19 H 0.057 0.943 20 H 0.050 0.950 21 H 0.094 0.906 22 H 0.099 0.901 23 H 0.077 0.923 24 H 0.099 0.901 25 H 0.084 0.916 26 H 0.050 0.950 27 H 0.016 0.984 28 H 0.062 0.938 29 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.926 -2.256 -7.711 9.424 hybrid contribution -0.178 -0.086 0.871 0.893 sum -5.104 -2.342 -6.840 8.850 Atomic orbital electron populations 1.22666 0.82727 1.01656 0.99302 1.87913 1.18453 1.28646 1.94548 1.25043 0.96923 0.84168 0.96465 0.90221 1.23288 0.98926 1.00392 0.96853 1.23339 0.98020 1.00403 0.98162 1.22015 0.91717 0.95731 0.84466 0.89201 1.43980 1.72531 1.12359 1.01555 1.20772 0.95857 0.85249 0.96411 1.19275 1.38626 0.90646 0.89842 0.91145 1.24958 0.99945 0.95981 0.98961 1.70099 1.50498 1.07487 1.27333 0.86281 0.77966 0.78751 0.83604 1.21339 1.20629 1.21627 0.94281 0.95028 0.90601 0.90080 0.92311 0.90130 0.91609 0.95044 0.98390 0.93783 0.93787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.85 101.05 1.10 1.60 15 2 O -0.38 -7.20 10.71 -35.23 -0.38 -7.58 15 3 C 0.03 0.66 3.83 -25.92 -0.10 0.56 15 4 H 0.08 1.54 6.61 -51.93 -0.34 1.20 15 5 C -0.16 -2.55 7.92 -25.83 -0.20 -2.75 15 6 C -0.16 -2.96 7.51 -25.83 -0.19 -3.15 15 7 C 0.17 3.76 4.18 -67.12 -0.28 3.48 15 8 H 0.09 2.03 8.05 -51.93 -0.42 1.61 15 9 N -0.59 -15.25 3.14 -172.56 -0.54 -15.80 15 10 C 0.16 4.05 7.67 59.85 0.46 4.51 15 11 C -0.25 -7.26 9.67 -15.06 -0.15 -7.40 15 12 H 0.07 1.99 7.88 -52.49 -0.41 1.57 15 13 C 0.00 -0.02 5.04 -17.43 -0.09 -0.11 15 14 N -0.91 -26.97 10.70 55.49 0.59 -26.38 15 15 Si 0.90 22.34 29.58 -169.99 -5.03 17.31 15 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 15 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 15 19 H 0.04 0.59 8.14 -51.93 -0.42 0.17 15 20 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 15 21 H 0.08 0.96 8.14 -51.93 -0.42 0.54 15 22 H 0.08 1.25 8.14 -51.93 -0.42 0.83 15 23 H 0.06 0.85 8.14 -51.93 -0.42 0.42 15 24 H 0.08 1.53 6.71 -51.93 -0.35 1.18 15 25 H 0.07 1.15 8.14 -51.93 -0.42 0.73 15 26 H 0.03 0.84 7.44 -51.93 -0.39 0.46 15 27 H 0.00 -0.05 6.16 -51.93 -0.32 -0.37 15 28 H 0.04 1.18 7.17 -51.93 -0.37 0.81 15 29 H 0.25 7.23 8.31 -40.82 -0.34 6.89 15 LS Contribution 239.30 15.07 3.61 3.61 Total: -1.00 -30.43 239.30 -5.48 -35.91 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -4.27 Total: -3.80 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 0.54 Total: -3.27 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.05 Total: -42.17 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.38 Total: -7.58 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -30.43 -5.48 -35.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724155240.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.664 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds