Wall clock time and date at job start Mon Mar 30 2020 02:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 114.00065 * 2 1 4 4 H 1.08996 * 112.84798 * 18.80288 * 3 2 1 5 5 C 1.53780 * 113.61276 * 247.49508 * 3 2 1 6 6 C 1.53951 * 87.11048 * 220.09214 * 5 3 2 7 7 C 1.53777 * 87.02284 * 25.36277 * 6 5 3 8 8 H 1.09000 * 113.61332 * 89.22470 * 7 6 5 9 9 N 1.46496 * 113.61793 * 220.04746 * 7 6 5 10 10 C 1.46503 * 120.00022 * 39.13626 * 9 7 6 11 11 C 1.36943 * 119.99971 * 219.13457 * 9 7 6 12 12 H 1.07996 * 119.99742 * 340.03474 * 11 9 7 13 13 C 1.38811 * 119.99882 * 160.03239 * 11 9 7 14 14 N 1.31623 * 120.00027 * 344.10822 * 13 11 9 15 15 Si 1.86795 * 120.00020 * 164.10793 * 13 11 9 16 16 H 1.48496 * 109.47293 * 84.88984 * 15 13 11 17 17 H 1.48499 * 109.47123 * 324.89040 * 15 13 11 18 18 H 1.48501 * 109.47293 * 204.89471 * 15 13 11 19 19 H 1.08999 * 109.46889 * 300.00175 * 1 2 3 20 20 H 1.08997 * 109.46680 * 60.00117 * 1 2 3 21 21 H 1.09003 * 109.47173 * 179.97438 * 1 2 3 22 22 H 1.08993 * 113.61762 * 334.56935 * 5 3 2 23 23 H 1.09005 * 113.61184 * 105.38954 * 5 3 2 24 24 H 1.09005 * 113.61640 * 270.84411 * 6 5 3 25 25 H 1.09002 * 113.66912 * 139.89270 * 6 5 3 26 26 H 1.08991 * 109.46788 * 265.46275 * 10 9 7 27 27 H 1.08995 * 109.46946 * 25.46914 * 10 9 7 28 28 H 1.09003 * 109.47018 * 145.46254 * 10 9 7 29 29 H 0.97003 * 120.00107 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3138 2.0788 0.3237 5 6 2.7535 1.6488 -1.3017 6 6 3.8254 2.3173 -0.4218 7 6 3.3756 1.3718 0.7046 8 1 3.9082 0.4208 0.7151 9 7 3.3257 2.0105 2.0220 10 6 2.8379 3.3858 2.1514 11 6 3.7350 1.3218 3.1327 12 1 3.7855 0.2433 3.1111 13 6 4.0850 2.0101 4.2862 14 7 4.3277 3.3027 4.2333 15 14 4.2115 1.1020 5.9137 16 1 5.5597 0.4919 6.0366 17 1 3.1790 0.0360 5.9672 18 1 3.9962 2.0562 7.0310 19 1 -0.3633 0.5139 0.8900 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 3.1167 0.7740 -1.8410 23 1 2.2135 2.3465 -1.9418 24 1 3.6266 3.3688 -0.2145 25 1 4.8453 2.1373 -0.7617 26 1 3.6825 4.0743 2.1298 27 1 2.1639 3.6114 1.3250 28 1 2.3042 3.4948 3.0956 29 1 4.5726 3.7837 5.0393 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724155240.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:45 Heat of formation + Delta-G solvation = -20.337005 kcal Electronic energy + Delta-G solvation = -11802.701679 eV Core-core repulsion = 9726.863451 eV Total energy + Delta-G solvation = -2075.838228 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.41644 -37.44419 -35.70764 -32.50528 -28.16359 -27.75143 -26.53446 -25.18405 -23.26731 -20.10165 -18.94750 -17.78287 -17.09633 -16.20454 -15.95740 -15.63725 -14.98961 -14.51596 -13.78432 -13.51755 -13.19481 -12.80965 -12.77356 -12.48896 -12.43388 -12.24730 -12.12846 -11.85857 -11.57293 -11.15047 -10.70769 -10.29967 -8.78180 -7.85129 -5.30129 1.44993 1.46339 1.56243 2.49569 3.02467 3.26822 3.69499 3.82991 3.87594 4.13174 4.26864 4.51076 4.58891 4.63363 4.80693 4.83253 4.89886 4.95266 5.12578 5.25007 5.32882 5.49225 5.60541 5.67594 6.29790 6.44884 7.13264 7.86032 8.28876 9.18035 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.048016 B = 0.012571 C = 0.011020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.001754 B = 2226.781830 C = 2540.234353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.401 6.401 3 C 0.041 3.959 4 H 0.077 0.923 5 C -0.131 4.131 6 C -0.152 4.152 7 C 0.145 3.855 8 H 0.074 0.926 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.268 4.268 12 H 0.065 0.935 13 C -0.053 4.053 14 N -0.938 5.938 15 Si 0.969 3.031 16 H -0.281 1.281 17 H -0.275 1.275 18 H -0.290 1.290 19 H 0.030 0.970 20 H 0.055 0.945 21 H 0.097 0.903 22 H 0.093 0.907 23 H 0.088 0.912 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.007 0.993 27 H 0.032 0.968 28 H 0.015 0.985 29 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.853 -2.804 -9.097 11.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.019 4.019 4 H 0.095 0.905 5 C -0.169 4.169 6 C -0.192 4.192 7 C 0.037 3.963 8 H 0.093 0.907 9 N -0.325 5.325 10 C 0.035 3.965 11 C -0.399 4.399 12 H 0.083 0.917 13 C -0.248 4.248 14 N -0.584 5.584 15 Si 0.797 3.203 16 H -0.208 1.208 17 H -0.200 1.200 18 H -0.216 1.216 19 H 0.049 0.951 20 H 0.073 0.927 21 H 0.115 0.885 22 H 0.112 0.888 23 H 0.107 0.893 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.025 0.975 27 H 0.050 0.950 28 H 0.034 0.966 29 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.705 -2.857 -8.936 10.980 hybrid contribution 0.029 0.035 1.183 1.184 sum -5.676 -2.822 -7.752 10.014 Atomic orbital electron populations 1.22887 0.80508 1.03403 1.00058 1.87870 1.20894 1.28521 1.94739 1.24805 0.95393 0.84361 0.97370 0.90508 1.23165 0.97049 1.00963 0.95731 1.23241 0.99463 0.99443 0.97031 1.22409 0.94345 0.95811 0.83784 0.90749 1.44189 1.73074 1.12578 1.02647 1.20480 0.95106 0.84687 0.96240 1.19545 1.38274 0.90758 0.91282 0.91703 1.25720 1.00191 0.96858 1.02025 1.70247 1.51619 1.08751 1.27805 0.85272 0.78047 0.77585 0.79441 1.20771 1.20042 1.21576 0.95077 0.92654 0.88496 0.88847 0.89343 0.90543 0.90804 0.97474 0.94993 0.96607 0.94148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.85 113.37 1.23 1.98 15 2 O -0.40 -14.53 10.71 -148.98 -1.60 -16.13 15 3 C 0.04 1.48 3.83 31.12 0.12 1.60 15 4 H 0.08 2.81 6.61 -2.39 -0.02 2.79 15 5 C -0.13 -3.81 7.92 31.18 0.25 -3.57 15 6 C -0.15 -5.36 7.51 31.18 0.23 -5.12 15 7 C 0.15 6.28 4.18 45.52 0.19 6.47 15 8 H 0.07 3.38 8.05 -2.39 -0.02 3.36 15 9 N -0.60 -31.75 3.14 -699.85 -2.20 -33.95 15 10 C 0.18 9.07 7.67 127.77 0.98 10.05 15 11 C -0.27 -15.54 9.67 84.03 0.81 -14.72 15 12 H 0.07 3.72 7.88 -2.91 -0.02 3.70 15 13 C -0.05 -3.07 5.04 84.86 0.43 -2.65 15 14 N -0.94 -56.68 10.70 21.65 0.23 -56.45 15 15 Si 0.97 46.41 29.58 68.60 2.03 48.43 15 16 H -0.28 -13.14 7.11 99.48 0.71 -12.43 15 17 H -0.28 -12.79 7.11 99.48 0.71 -12.09 15 18 H -0.29 -13.75 7.11 99.48 0.71 -13.04 15 19 H 0.03 0.88 8.14 -2.39 -0.02 0.86 15 20 H 0.05 1.25 8.14 -2.39 -0.02 1.23 15 21 H 0.10 2.20 8.14 -2.39 -0.02 2.18 15 22 H 0.09 2.54 8.14 -2.39 -0.02 2.52 15 23 H 0.09 2.12 8.14 -2.38 -0.02 2.10 15 24 H 0.08 2.76 6.71 -2.38 -0.02 2.75 15 25 H 0.07 2.45 8.14 -2.39 -0.02 2.43 15 26 H 0.01 0.38 7.44 -2.39 -0.02 0.37 15 27 H 0.03 1.36 6.16 -2.39 -0.01 1.34 15 28 H 0.02 0.85 7.17 -2.39 -0.02 0.83 15 29 H 0.25 14.56 8.31 -92.71 -0.77 13.79 15 Total: -1.00 -65.16 239.30 3.82 -61.35 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: 1.11 Total: 2.69 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 4.24 Total: -5.95 kcal Atomic # 7 Polarization: -88.43 SS G_CDS: -1.96 Total: -90.39 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -1.60 Total: -16.13 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Total: -65.16 3.82 -61.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724155240.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.009 kcal (2) G-P(sol) polarization free energy of solvation -65.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds