Wall clock time and date at job start Mon Mar 30 2020 02:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42901 * 113.99746 * 2 1 4 4 H 1.08993 * 112.85477 * 341.20048 * 3 2 1 5 5 C 1.53785 * 113.68618 * 112.46436 * 3 2 1 6 6 C 1.53784 * 87.07989 * 89.12894 * 5 3 2 7 7 C 1.53776 * 113.61166 * 209.99864 * 3 2 1 8 8 H 1.09006 * 113.61253 * 156.17283 * 7 3 2 9 9 N 1.46498 * 113.61902 * 25.35271 * 7 3 2 10 10 C 1.46494 * 119.99841 * 300.00173 * 9 7 3 11 11 C 1.36936 * 119.99849 * 119.99585 * 9 7 3 12 12 H 1.07998 * 120.00059 * 339.91082 * 11 9 7 13 13 C 1.38811 * 119.99580 * 160.18651 * 11 9 7 14 14 N 1.31619 * 120.00376 * 344.38946 * 13 11 9 15 15 Si 1.86804 * 119.99845 * 164.38636 * 13 11 9 16 16 H 1.48500 * 109.46964 * 90.00403 * 15 13 11 17 17 H 1.48500 * 109.47065 * 209.99981 * 15 13 11 18 18 H 1.48502 * 109.47144 * 330.00227 * 15 13 11 19 19 H 1.08998 * 109.47196 * 300.00022 * 1 2 3 20 20 H 1.08998 * 109.46839 * 59.99825 * 1 2 3 21 21 H 1.08997 * 109.46800 * 179.97438 * 1 2 3 22 22 H 1.08999 * 113.61054 * 203.67337 * 5 3 2 23 23 H 1.08996 * 113.61654 * 334.49446 * 5 3 2 24 24 H 1.09010 * 113.60980 * 270.88393 * 6 5 3 25 25 H 1.08995 * 113.61596 * 139.98478 * 6 5 3 26 26 H 1.08998 * 109.47399 * 264.56360 * 10 9 7 27 27 H 1.08999 * 109.47565 * 24.56342 * 10 9 7 28 28 H 1.09005 * 109.47201 * 144.56862 * 10 9 7 29 29 H 0.96994 * 120.00414 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3138 2.0789 -0.3237 5 6 2.7531 1.6510 1.3014 6 6 4.0063 1.0353 0.6570 7 6 3.3755 1.3719 -0.7045 8 1 3.6298 2.3665 -1.0710 9 7 3.5665 0.3276 -1.7140 10 6 3.5107 -1.0842 -1.3271 11 6 3.7970 0.6713 -3.0194 12 1 3.5249 1.6539 -3.3752 13 6 4.3753 -0.2455 -3.8866 14 7 4.9785 -1.3134 -3.4090 15 14 4.2972 0.0364 -5.7316 16 1 5.4835 0.8183 -6.1635 17 1 4.2855 -1.2729 -6.4323 18 1 3.0606 0.7877 -6.0657 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 2.8378 2.7222 1.4845 23 1 2.3917 1.1004 2.1699 24 1 4.1093 -0.0348 0.8379 25 1 4.9212 1.5905 0.8637 26 1 4.5206 -1.4507 -1.1429 27 1 2.9152 -1.1892 -0.4202 28 1 3.0549 -1.6633 -2.1302 29 1 5.3822 -1.9542 -4.0150 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724155242.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:48 Heat of formation + Delta-G solvation = -12.457375 kcal Electronic energy + Delta-G solvation = -11986.371465 eV Core-core repulsion = 9910.874923 eV Total energy + Delta-G solvation = -2075.496542 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.46743 -37.08868 -35.66305 -32.45588 -28.03369 -27.59184 -26.46177 -25.44467 -23.14746 -20.05109 -18.84005 -17.60696 -16.81411 -16.18260 -15.95402 -15.53587 -14.86585 -14.57560 -14.18544 -13.41212 -13.13538 -12.77563 -12.68832 -12.66849 -12.21295 -12.19632 -11.76595 -11.61842 -11.34031 -11.16427 -10.57004 -10.20225 -8.68067 -7.77184 -5.23484 1.45451 1.47433 1.57022 2.52902 2.93957 3.32506 3.80392 3.95295 3.96195 4.21782 4.38598 4.54156 4.63422 4.66975 4.87409 4.88044 5.02803 5.17239 5.17823 5.43090 5.53873 5.55261 5.65151 5.76540 6.34495 6.55988 7.19096 7.95132 8.40653 9.24171 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.052948 B = 0.012763 C = 0.012044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.698585 B = 2193.306477 C = 2324.316174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.378 6.378 3 C 0.040 3.960 4 H 0.073 0.927 5 C -0.135 4.135 6 C -0.154 4.154 7 C 0.138 3.862 8 H 0.093 0.907 9 N -0.595 5.595 10 C 0.192 3.808 11 C -0.267 4.267 12 H 0.072 0.928 13 C -0.060 4.060 14 N -0.940 5.940 15 Si 0.970 3.030 16 H -0.283 1.283 17 H -0.295 1.295 18 H -0.271 1.271 19 H 0.056 0.944 20 H 0.034 0.966 21 H 0.087 0.913 22 H 0.110 0.890 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.064 0.936 26 H -0.011 1.011 27 H 0.051 0.949 28 H 0.001 0.999 29 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.307 5.583 7.669 11.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.297 6.297 3 C -0.021 4.021 4 H 0.091 0.909 5 C -0.173 4.173 6 C -0.193 4.193 7 C 0.029 3.971 8 H 0.111 0.889 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.397 4.397 12 H 0.090 0.910 13 C -0.254 4.254 14 N -0.587 5.587 15 Si 0.798 3.202 16 H -0.209 1.209 17 H -0.221 1.221 18 H -0.196 1.196 19 H 0.074 0.926 20 H 0.053 0.947 21 H 0.106 0.894 22 H 0.128 0.872 23 H 0.095 0.905 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.007 0.993 27 H 0.069 0.931 28 H 0.019 0.981 29 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.126 5.270 7.555 11.647 hybrid contribution 0.093 -0.109 -1.143 1.152 sum -7.033 5.162 6.412 10.827 Atomic orbital electron populations 1.22892 0.81044 1.02954 1.00066 1.87967 1.20167 1.26968 1.94585 1.24168 0.95886 0.84836 0.97242 0.90872 1.23171 0.95627 1.01838 0.96660 1.23414 0.98055 1.00330 0.97546 1.22505 0.93950 0.92676 0.87950 0.88919 1.44002 1.81546 1.01632 1.04280 1.20458 0.95594 0.83545 0.95635 1.19658 1.32983 1.00079 0.86963 0.91019 1.25780 0.98707 0.98259 1.02687 1.70301 1.39827 1.14491 1.34126 0.85235 0.78058 0.76537 0.80380 1.20923 1.22100 1.19586 0.92558 0.94741 0.89450 0.87205 0.90511 0.92137 0.91734 0.99317 0.93141 0.98058 0.94473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.85 113.37 1.23 1.98 15 2 O -0.38 -14.17 7.24 -148.98 -1.08 -15.25 15 3 C 0.04 1.37 4.31 31.12 0.13 1.50 15 4 H 0.07 2.26 7.87 -2.39 -0.02 2.24 15 5 C -0.14 -3.81 7.92 31.12 0.25 -3.57 15 6 C -0.15 -5.63 7.43 31.12 0.23 -5.40 15 7 C 0.14 5.80 4.35 45.52 0.20 6.00 15 8 H 0.09 3.73 8.05 -2.38 -0.02 3.71 15 9 N -0.60 -31.78 3.07 -699.86 -2.15 -33.93 15 10 C 0.19 10.48 7.26 127.77 0.93 11.41 15 11 C -0.27 -15.36 9.68 84.03 0.81 -14.55 15 12 H 0.07 3.94 7.88 -2.91 -0.02 3.92 15 13 C -0.06 -3.52 5.06 84.86 0.43 -3.09 15 14 N -0.94 -58.73 10.67 21.65 0.23 -58.49 15 15 Si 0.97 46.72 29.58 68.60 2.03 48.75 15 16 H -0.28 -13.24 7.11 99.48 0.71 -12.53 15 17 H -0.29 -14.26 7.11 99.48 0.71 -13.55 15 18 H -0.27 -12.44 7.11 99.48 0.71 -11.73 15 19 H 0.06 1.27 8.14 -2.39 -0.02 1.25 15 20 H 0.03 0.97 8.14 -2.39 -0.02 0.95 15 21 H 0.09 2.23 8.14 -2.39 -0.02 2.21 15 22 H 0.11 2.45 8.14 -2.39 -0.02 2.43 15 23 H 0.08 2.02 8.14 -2.39 -0.02 2.00 15 24 H 0.06 2.48 6.60 -2.38 -0.02 2.47 15 25 H 0.06 2.19 8.14 -2.39 -0.02 2.17 15 26 H -0.01 -0.68 7.39 -2.39 -0.02 -0.70 15 27 H 0.05 2.49 4.72 -2.39 -0.01 2.48 15 28 H 0.00 0.04 7.22 -2.38 -0.02 0.02 15 29 H 0.25 14.87 8.31 -92.71 -0.77 14.10 15 Total: -1.00 -67.57 235.61 4.35 -63.22 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: 1.11 Total: 1.42 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 4.21 Total: -5.72 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -1.92 Total: -92.43 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -1.08 Total: -15.25 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -67.57 4.35 -63.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724155242.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.765 kcal (2) G-P(sol) polarization free energy of solvation -67.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds