Wall clock time and date at job start Mon Mar 30 2020 01:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47292 * 2 1 4 4 H 1.09002 * 109.87087 * 306.13931 * 3 2 1 5 5 C 1.54319 * 109.88452 * 67.31699 * 3 2 1 6 6 C 1.55449 * 102.96689 * 141.61204 * 5 3 2 7 7 H 1.09000 * 111.01424 * 82.52600 * 6 5 3 8 8 O 1.42909 * 111.11734 * 206.46506 * 6 5 3 9 9 C 1.54910 * 101.45230 * 324.51748 * 6 5 3 10 10 N 1.47019 * 109.88140 * 185.13009 * 3 2 1 11 11 C 1.36937 * 125.65375 * 61.65870 * 10 3 2 12 12 H 1.08003 * 119.99690 * 14.72630 * 11 10 3 13 13 C 1.38805 * 120.00650 * 194.72412 * 11 10 3 14 14 N 1.31620 * 119.99846 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00403 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47067 * 90.00327 * 15 13 11 17 17 H 1.48500 * 109.47106 * 209.99941 * 15 13 11 18 18 H 1.48501 * 109.46817 * 330.00045 * 15 13 11 19 19 H 1.09007 * 109.47209 * 54.61166 * 1 2 3 20 20 H 1.08992 * 109.47659 * 174.61359 * 1 2 3 21 21 H 1.09001 * 109.47432 * 294.61978 * 1 2 3 22 22 H 1.08995 * 109.47063 * 239.99196 * 2 1 3 23 23 H 1.09003 * 109.46866 * 119.99385 * 2 1 3 24 24 H 1.08994 * 110.72175 * 259.97154 * 5 3 2 25 25 H 1.09001 * 110.72107 * 23.25189 * 5 3 2 26 26 H 0.96698 * 113.99945 * 173.55715 * 8 6 5 27 27 H 1.09008 * 110.36553 * 278.11267 * 9 6 5 28 28 H 1.08997 * 110.36599 * 155.90191 * 9 6 5 29 29 H 0.97004 * 120.00606 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5935 1.9933 -0.8279 5 6 1.6874 2.1239 1.3389 6 6 2.9450 2.9893 1.6317 7 1 2.9029 3.9352 1.0917 8 8 3.1032 3.2096 3.0349 9 6 4.0757 2.0852 1.0807 10 7 3.5049 1.4548 -0.1236 11 6 4.2208 0.9627 -1.1822 12 1 3.7222 0.7387 -2.1137 13 6 5.5871 0.7518 -1.0582 14 7 6.1947 1.0244 0.0772 15 14 6.5635 0.0799 -2.5020 16 1 7.0640 1.2074 -3.3287 17 1 7.7136 -0.7118 -1.9963 18 1 5.6889 -0.7901 -3.3288 19 1 -0.3634 0.5952 -0.8378 20 1 -0.3634 -1.0230 -0.0965 21 1 -0.3634 0.4281 0.9342 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 0.8036 2.7525 1.2307 25 1 1.5399 1.3809 2.1227 26 1 3.9255 3.6597 3.2721 27 1 4.3459 1.3258 1.8145 28 1 4.9471 2.6850 0.8182 29 1 7.1496 0.8775 0.1638 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885248001.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:13 Heat of formation + Delta-G solvation = -60.018015 kcal Electronic energy + Delta-G solvation = -11875.778430 eV Core-core repulsion = 9798.219504 eV Total energy + Delta-G solvation = -2077.558926 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.85953 -36.90101 -34.88100 -32.95478 -30.71794 -28.16451 -26.42251 -23.64278 -22.06788 -20.90486 -18.84192 -18.02730 -17.15248 -16.00987 -15.70201 -15.27505 -14.41682 -14.28247 -14.02116 -13.71429 -13.39059 -12.81045 -12.73344 -12.61578 -12.39434 -12.13379 -11.87980 -11.70535 -11.42275 -11.24202 -10.76873 -10.67255 -8.83977 -7.88211 -5.26151 1.44979 1.46668 1.55507 2.47630 3.22079 3.30461 3.78685 3.95068 4.13395 4.20435 4.36228 4.46656 4.60599 4.76756 4.83360 5.00116 5.04559 5.23946 5.29611 5.40289 5.47594 5.49935 5.65914 5.67491 6.21754 6.88256 7.07754 7.75366 8.42871 9.23045 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.037466 B = 0.015302 C = 0.011429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.171348 B = 1829.372340 C = 2449.244600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.125 4.125 3 C 0.152 3.848 4 H 0.043 0.957 5 C -0.104 4.104 6 C 0.080 3.920 7 H 0.070 0.930 8 O -0.572 6.572 9 C 0.156 3.844 10 N -0.617 5.617 11 C -0.236 4.236 12 H 0.080 0.920 13 C -0.065 4.065 14 N -0.950 5.950 15 Si 0.977 3.023 16 H -0.284 1.284 17 H -0.295 1.295 18 H -0.269 1.269 19 H 0.060 0.940 20 H 0.059 0.941 21 H 0.063 0.937 22 H 0.040 0.960 23 H 0.036 0.964 24 H 0.097 0.903 25 H 0.069 0.931 26 H 0.391 0.609 27 H -0.005 1.005 28 H 0.039 0.961 29 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.376 2.282 1.109 8.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C 0.046 3.954 4 H 0.061 0.939 5 C -0.142 4.142 6 C 0.020 3.980 7 H 0.088 0.912 8 O -0.379 6.379 9 C 0.030 3.970 10 N -0.342 5.342 11 C -0.365 4.365 12 H 0.097 0.903 13 C -0.258 4.258 14 N -0.599 5.599 15 Si 0.805 3.195 16 H -0.211 1.211 17 H -0.222 1.222 18 H -0.194 1.194 19 H 0.079 0.921 20 H 0.078 0.922 21 H 0.082 0.918 22 H 0.059 0.941 23 H 0.055 0.945 24 H 0.116 0.884 25 H 0.087 0.913 26 H 0.240 0.760 27 H 0.013 0.987 28 H 0.057 0.943 29 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.756 1.936 1.082 9.032 hybrid contribution 1.671 -0.270 -0.615 1.801 sum -7.085 1.667 0.467 7.293 Atomic orbital electron populations 1.21690 0.93476 1.01985 1.02349 1.21887 0.96840 0.97592 1.00135 1.21278 0.83830 0.94797 0.95491 0.93906 1.22610 0.96770 0.98491 0.96312 1.23223 0.96534 0.97040 0.81175 0.91245 1.86348 1.45903 1.82597 1.23044 1.21812 0.94166 0.93271 0.87795 1.44687 1.01396 1.69238 1.18912 1.19335 0.90737 1.35207 0.91211 0.90254 1.25748 0.98288 1.02025 0.99775 1.70136 1.09034 1.54823 1.25875 0.85103 0.77981 0.77986 0.78433 1.21055 1.22189 1.19372 0.92067 0.92213 0.91785 0.94102 0.94487 0.88438 0.91252 0.75991 0.98669 0.94260 0.94343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.68 71.98 0.70 -3.06 15 2 C -0.12 -4.73 5.43 30.59 0.17 -4.57 15 3 C 0.15 6.23 3.17 45.34 0.14 6.38 15 4 H 0.04 1.70 8.14 -2.39 -0.02 1.68 15 5 C -0.10 -3.70 5.46 31.88 0.17 -3.53 15 6 C 0.08 3.11 4.44 32.09 0.14 3.25 15 7 H 0.07 2.53 8.14 -2.39 -0.02 2.51 15 8 O -0.57 -20.13 13.48 -148.98 -2.01 -22.14 15 9 C 0.16 7.83 5.13 86.85 0.45 8.27 15 10 N -0.62 -31.97 3.13 -668.27 -2.09 -34.06 15 11 C -0.24 -13.26 9.71 84.03 0.82 -12.45 15 12 H 0.08 4.29 7.83 -2.91 -0.02 4.26 15 13 C -0.07 -3.74 5.47 84.86 0.46 -3.27 15 14 N -0.95 -57.59 10.58 21.65 0.23 -57.36 15 15 Si 0.98 45.96 29.55 68.60 2.03 47.98 15 16 H -0.28 -13.03 7.11 99.48 0.71 -12.32 15 17 H -0.30 -14.02 7.11 99.48 0.71 -13.32 15 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 19 H 0.06 1.54 8.14 -2.38 -0.02 1.52 15 20 H 0.06 1.46 8.14 -2.39 -0.02 1.44 15 21 H 0.06 1.58 7.65 -2.39 -0.02 1.56 15 22 H 0.04 1.69 7.84 -2.39 -0.02 1.67 15 23 H 0.04 1.51 8.02 -2.39 -0.02 1.49 15 24 H 0.10 2.80 8.14 -2.39 -0.02 2.78 15 25 H 0.07 2.51 7.77 -2.39 -0.02 2.49 15 26 H 0.39 10.79 9.11 -74.06 -0.67 10.12 15 27 H 0.00 -0.27 8.06 -2.38 -0.02 -0.29 15 28 H 0.04 2.18 6.93 -2.39 -0.02 2.16 15 29 H 0.25 14.57 8.31 -92.71 -0.77 13.80 15 Total: -1.00 -65.94 238.79 1.65 -64.29 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 0.44 Total: 10.26 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 3.05 Total: -8.97 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -1.86 Total: -91.42 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -2.01 Total: -22.14 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -65.94 1.65 -64.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885248001.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.271 kcal (2) G-P(sol) polarization free energy of solvation -65.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds