Wall clock time and date at job start Mon Mar 30 2020 01:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30786 * 1 3 3 Si 1.86799 * 120.00152 * 2 1 4 4 H 1.48497 * 109.47059 * 239.99577 * 3 2 1 5 5 H 1.48497 * 109.47200 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47164 * 119.99767 * 3 2 1 7 7 C 1.40027 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99926 * 180.02562 * 7 2 1 9 9 C 1.40932 * 120.00100 * 359.97438 * 7 2 1 10 10 C 1.35870 * 124.86287 * 0.17454 * 9 7 2 11 11 C 1.51053 * 107.76857 * 180.26957 * 10 9 7 12 12 C 1.50914 * 105.85629 * 359.73513 * 11 10 9 13 13 C 1.37762 * 132.63479 * 180.02562 * 12 11 10 14 14 C 1.38386 * 119.99902 * 179.97438 * 13 12 11 15 15 C 1.38340 * 120.08331 * 0.02562 * 14 13 12 16 16 C 1.37938 * 120.28786 * 359.97438 * 15 14 13 17 17 C 1.39303 * 106.99051 * 359.97438 * 12 11 10 18 18 H 0.97003 * 119.99627 * 0.02562 * 1 2 3 19 19 H 1.08008 * 126.11447 * 0.04142 * 10 9 7 20 20 H 1.08998 * 110.17284 * 240.63659 * 11 10 9 21 21 H 1.08998 * 110.17143 * 118.82980 * 11 10 9 22 22 H 1.07999 * 119.99391 * 359.97438 * 13 12 11 23 23 H 1.08004 * 119.95877 * 179.97438 * 14 13 12 24 24 H 1.07999 * 119.86096 * 180.02562 * 15 14 13 25 25 H 1.08004 * 120.02655 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 3.0957 1.6963 -1.2124 5 1 1.2770 2.7464 -0.0006 6 1 3.0956 1.6964 1.2125 7 6 2.0080 -1.2127 0.0005 8 1 3.0879 -1.2127 0.0010 9 6 1.3033 -2.4332 0.0016 10 6 -0.0505 -2.5484 -0.0012 11 6 -0.3880 -4.0207 0.0081 12 6 0.9350 -4.7469 0.0099 13 6 1.2652 -6.0843 0.0166 14 6 2.5946 -6.4687 0.0160 15 6 3.5933 -5.5114 0.0091 16 6 3.2713 -4.1702 0.0024 17 6 1.9329 -3.7749 0.0017 18 1 -0.4850 0.8401 -0.0004 19 1 -0.7588 -1.7329 -0.0052 20 1 -0.9586 -4.2811 -0.8833 21 1 -0.9552 -4.2707 0.9046 22 1 0.4866 -6.8327 0.0224 23 1 2.8528 -7.5174 0.0217 24 1 4.6296 -5.8155 0.0083 25 1 4.0543 -3.4264 -0.0034 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001845706.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:07 Heat of formation + Delta-G solvation = 32.702581 kcal Electronic energy + Delta-G solvation = -10471.973314 eV Core-core repulsion = 8608.025312 eV Total energy + Delta-G solvation = -1863.948002 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 186.074 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.00286 -35.04877 -32.87700 -30.50314 -27.76024 -27.15141 -23.93025 -21.27999 -20.01397 -18.80629 -16.59753 -15.08472 -14.65807 -14.17840 -13.92386 -13.26864 -12.80160 -12.52618 -11.59139 -11.28493 -11.25274 -11.21136 -10.67162 -10.25542 -10.04340 -9.69715 -9.59431 -9.41706 -8.47219 -7.92742 -6.78954 -6.34774 -4.22798 2.05608 2.20239 3.09611 3.16012 3.19297 3.99504 4.08749 4.72489 5.46438 5.61913 5.65139 5.75526 6.00695 6.26447 6.39163 6.51841 6.80346 6.81231 6.89471 7.12325 7.19061 7.27695 7.44984 7.70818 7.86232 8.08584 8.52448 9.04194 9.17740 9.26705 10.48195 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.060118 B = 0.012054 C = 0.010096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.636075 B = 2322.268165 C = 2772.705012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.056 3.944 3 Si 0.914 3.086 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.430 4.430 8 H 0.065 0.935 9 C 0.037 3.963 10 C -0.319 4.319 11 C -0.042 4.042 12 C -0.113 4.113 13 C -0.112 4.112 14 C -0.151 4.151 15 C -0.132 4.132 16 C -0.118 4.118 17 C -0.031 4.031 18 H 0.272 0.728 19 H 0.171 0.829 20 H 0.060 0.940 21 H 0.060 0.940 22 H 0.108 0.892 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.418 -5.091 0.016 5.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.156 4.156 3 Si 0.740 3.260 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.461 4.461 8 H 0.084 0.916 9 C 0.036 3.964 10 C -0.343 4.343 11 C -0.078 4.078 12 C -0.113 4.113 13 C -0.130 4.130 14 C -0.169 4.169 15 C -0.150 4.150 16 C -0.136 4.136 17 C -0.031 4.031 18 H 0.084 0.916 19 H 0.187 0.813 20 H 0.078 0.922 21 H 0.078 0.922 22 H 0.126 0.874 23 H 0.128 0.872 24 H 0.128 0.872 25 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.257 -4.913 0.017 5.406 hybrid contribution 0.529 0.634 0.002 0.826 sum 2.786 -4.279 0.019 5.106 Atomic orbital electron populations 1.69540 1.07257 1.27610 1.39371 1.25705 0.94796 1.00660 0.94400 0.86275 0.79706 0.80617 0.79438 1.19414 1.20552 1.19410 1.19066 0.93834 0.89952 1.43293 0.91630 1.17873 0.92809 0.88075 0.97661 1.24534 0.96872 0.92359 1.20490 1.19772 0.92566 0.96447 0.99005 1.20852 0.98015 0.92756 0.99704 1.20266 0.95756 0.94437 1.02553 1.20808 0.92847 0.98310 1.04909 1.20808 0.98292 0.93086 1.02797 1.20865 0.95864 0.95155 1.01746 1.20518 0.92192 0.96075 0.94335 0.91649 0.81269 0.92216 0.92210 0.87407 0.87205 0.87223 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.87 10.11 55.55 0.56 -21.31 15 2 C 0.06 1.49 5.49 -17.33 -0.10 1.40 15 3 Si 0.91 19.83 29.56 -169.99 -5.02 14.80 15 4 H -0.27 -5.77 7.11 56.52 0.40 -5.36 15 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 7 C -0.43 -11.98 9.34 -37.89 -0.35 -12.33 15 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 15 9 C 0.04 1.04 5.92 -105.63 -0.63 0.41 15 10 C -0.32 -8.62 10.07 -34.98 -0.35 -8.98 15 11 C -0.04 -0.96 6.73 -28.76 -0.19 -1.15 15 12 C -0.11 -2.58 6.33 -104.30 -0.66 -3.24 15 13 C -0.11 -2.16 10.03 -39.70 -0.40 -2.56 15 14 C -0.15 -2.67 10.05 -39.49 -0.40 -3.07 15 15 C -0.13 -2.43 10.02 -39.65 -0.40 -2.83 15 16 C -0.12 -2.57 10.04 -39.20 -0.39 -2.96 15 17 C -0.03 -0.77 6.15 -104.91 -0.64 -1.42 15 18 H 0.27 6.75 8.30 -40.82 -0.34 6.41 15 19 H 0.17 4.80 5.40 -52.48 -0.28 4.51 15 20 H 0.06 1.28 8.14 -51.93 -0.42 0.86 15 21 H 0.06 1.28 8.14 -51.93 -0.42 0.86 15 22 H 0.11 1.77 8.06 -52.49 -0.42 1.34 15 23 H 0.11 1.57 8.06 -52.48 -0.42 1.15 15 24 H 0.11 1.66 8.06 -52.49 -0.42 1.24 15 25 H 0.11 2.33 8.06 -52.48 -0.42 1.90 15 LS Contribution 221.23 15.07 3.33 3.33 Total: -1.00 -28.53 221.23 -8.01 -36.54 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -2.37 Total: 3.36 kcal Atomic # 6 Polarization: -32.22 SS G_CDS: -4.51 Total: -36.73 kcal Atomic # 7 Polarization: -21.87 SS G_CDS: 0.56 Total: -21.31 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -28.53 -8.01 -36.54 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001845706.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.240 kcal (2) G-P(sol) polarization free energy of solvation -28.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds