Wall clock time and date at job start Mon Mar 30 2020 01:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34943 * 126.02600 * 124.71088 * 10 9 7 12 12 C 1.35311 * 107.76274 * 179.89459 * 11 10 9 13 13 C 1.39971 * 107.91076 * 0.37068 * 12 11 10 14 14 Cl 1.73596 * 125.91400 * 179.77548 * 13 12 11 15 15 N 1.30904 * 108.17405 * 359.76811 * 13 12 11 16 16 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 17 17 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 18 18 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 19 19 H 1.07998 * 126.11709 * 0.03387 * 11 10 9 20 20 H 1.08002 * 126.04649 * 180.13575 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2498 -4.6218 0.8829 12 6 3.2655 -5.4420 0.5273 13 6 3.8659 -4.9112 -0.6203 14 17 5.2204 -5.5900 -1.4676 15 7 3.2291 -3.8142 -0.9440 16 1 -0.4850 -0.8400 0.0004 17 1 0.6281 -2.5591 0.8866 18 1 0.6207 -2.5548 -0.8933 19 1 1.5925 -4.7526 1.7297 20 1 3.5631 -6.3444 1.0406 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002536623.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:29 Heat of formation + Delta-G solvation = 40.804074 kcal Electronic energy + Delta-G solvation = -9007.614973 eV Core-core repulsion = 7038.045085 eV Total energy + Delta-G solvation = -1969.569888 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.025 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -42.10278 -37.74743 -36.05107 -33.26525 -31.19927 -28.49857 -25.30107 -22.17147 -21.99028 -19.29623 -18.08594 -16.45887 -15.88141 -15.57296 -15.16337 -14.42062 -14.41006 -13.68112 -13.35473 -12.85829 -12.57325 -12.46190 -11.96247 -11.50514 -11.16513 -10.72478 -10.27630 -9.57773 -8.82741 -6.59391 0.53092 0.91384 1.50724 1.56694 1.65464 1.78351 2.07368 2.46974 2.98564 3.77244 4.11105 4.53411 4.63774 4.72830 4.84571 5.35992 5.53524 5.83795 6.19032 6.36099 6.64381 7.15585 8.56075 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.061681 B = 0.010231 C = 0.009159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.842985 B = 2736.115181 C = 3056.472048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.016 4.016 3 Si 1.118 2.882 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.278 1.278 7 C -0.626 4.626 8 H 0.044 0.956 9 C 0.255 3.745 10 N -0.340 5.340 11 C 0.059 3.941 12 C -0.269 4.269 13 C 0.091 3.909 14 Cl 0.006 6.994 15 N -0.324 5.324 16 H 0.262 0.738 17 H 0.062 0.938 18 H 0.018 0.982 19 H 0.214 0.786 20 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.465 -9.171 2.339 10.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.216 4.216 3 Si 0.939 3.061 4 H -0.199 1.199 5 H -0.194 1.194 6 H -0.204 1.204 7 C -0.664 4.664 8 H 0.062 0.938 9 C 0.136 3.864 10 N -0.122 5.122 11 C -0.089 4.089 12 C -0.299 4.299 13 C -0.099 4.099 14 Cl 0.034 6.966 15 N -0.151 5.151 16 H 0.072 0.928 17 H 0.080 0.920 18 H 0.036 0.964 19 H 0.231 0.769 20 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 5.196 -6.527 1.443 8.466 hybrid contribution 0.202 -2.400 0.244 2.421 sum 5.397 -8.927 1.687 10.567 Atomic orbital electron populations 1.70953 1.07400 1.30260 1.47110 1.27238 0.96427 1.06009 0.91974 0.82898 0.74181 0.71220 0.77814 1.19867 1.19429 1.20367 1.22287 0.94672 0.92232 1.57198 0.93765 1.19521 0.86366 0.82656 0.97815 1.48928 1.23540 1.20312 1.19459 1.23356 1.00590 0.88278 0.96653 1.21547 1.01466 1.06568 1.00297 1.22994 0.94821 0.95250 0.96818 1.98327 1.39361 1.81779 1.77154 1.77321 1.02998 1.18248 1.16513 0.92848 0.92018 0.96379 0.76918 0.79603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.16 13.65 21.45 0.29 -52.86 14 2 C -0.02 -0.91 5.46 84.65 0.46 -0.45 14 3 Si 1.12 49.43 29.90 68.60 2.05 51.48 14 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 14 5 H -0.27 -11.11 7.11 99.48 0.71 -10.41 14 6 H -0.28 -11.92 7.11 99.48 0.71 -11.22 14 7 C -0.63 -35.25 9.24 25.60 0.24 -35.01 14 8 H 0.04 2.62 7.81 -2.91 -0.02 2.60 14 9 C 0.26 12.75 5.58 85.64 0.48 13.23 14 10 N -0.34 -15.31 3.67 -351.80 -1.29 -16.60 14 11 C 0.06 2.01 11.45 83.54 0.96 2.97 14 12 C -0.27 -8.57 10.80 22.01 0.24 -8.33 14 13 C 0.09 3.48 7.85 85.25 0.67 4.15 14 14 Cl 0.01 0.19 29.32 -2.72 -0.08 0.11 14 15 N -0.32 -15.17 12.41 -49.68 -0.62 -15.79 14 16 H 0.26 14.84 7.22 -92.71 -0.67 14.17 14 17 H 0.06 2.88 7.94 -2.39 -0.02 2.87 14 18 H 0.02 0.97 8.00 -2.39 -0.02 0.95 14 19 H 0.21 5.25 8.06 -2.91 -0.02 5.23 14 20 H 0.19 4.32 8.06 -2.91 -0.02 4.29 14 Total: -1.00 -64.43 207.73 4.74 -59.69 By element: Atomic # 1 Polarization: -3.93 SS G_CDS: 1.34 Total: -2.59 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: 3.04 Total: -23.45 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -1.61 Total: -85.25 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 2.05 Total: 51.48 kcal Atomic # 17 Polarization: 0.19 SS G_CDS: -0.08 Total: 0.11 kcal Total: -64.43 4.74 -59.69 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002536623.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.495 kcal (2) G-P(sol) polarization free energy of solvation -64.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds