Wall clock time and date at job start Mon Mar 30 2020 01:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30945 * 125.79100 * 2 1 4 4 N 1.40100 * 108.28297 * 179.97438 * 3 2 1 5 5 C 1.37374 * 126.11716 * 179.97438 * 4 3 2 6 6 H 1.08000 * 120.00548 * 179.74658 * 5 4 3 7 7 C 1.38995 * 120.00063 * 0.02660 * 5 4 3 8 8 N 1.31292 * 119.99451 * 359.71861 * 7 5 4 9 9 Si 1.86798 * 119.99971 * 179.72536 * 7 5 4 10 10 H 1.48498 * 109.47416 * 59.99629 * 9 7 5 11 11 H 1.48508 * 109.46609 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46903 * 299.99214 * 9 7 5 13 13 C 1.36362 * 107.76922 * 0.25935 * 4 3 2 14 14 C 1.35293 * 107.56963 * 359.57859 * 13 4 3 15 15 Cl 1.73603 * 126.01532 * 180.15911 * 14 13 4 16 16 H 1.09000 * 109.46817 * 90.03017 * 1 2 3 17 17 H 1.08998 * 109.46580 * 210.02937 * 1 2 3 18 18 H 1.09000 * 109.46839 * 330.02710 * 1 2 3 19 19 H 0.97001 * 119.99389 * 179.97438 * 8 7 5 20 20 H 1.07994 * 126.21150 * 179.70558 * 13 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2729 1.0622 0.0000 4 7 3.6090 0.6407 0.0006 5 6 4.7150 1.4554 0.0003 6 1 5.7045 1.0227 0.0049 7 6 4.5607 2.8368 -0.0001 8 7 3.3578 3.3628 -0.0058 9 14 6.0647 3.9446 0.0072 10 1 6.8842 3.6747 -1.2014 11 1 5.6328 5.3655 0.0048 12 1 6.8726 3.6743 1.2236 13 6 3.6152 -0.7229 -0.0049 14 6 2.3273 -1.1372 0.0007 15 17 1.7855 -2.7866 0.0010 16 1 -0.3633 -0.0005 -1.0277 17 1 -0.3632 -0.8897 0.5143 18 1 -0.3633 0.8902 0.5134 19 1 3.2501 4.3268 -0.0058 20 1 4.4894 -1.3569 -0.0105 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002537503.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:40 Heat of formation + Delta-G solvation = 41.738648 kcal Electronic energy + Delta-G solvation = -9206.617394 eV Core-core repulsion = 7237.088032 eV Total energy + Delta-G solvation = -1969.529361 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.025 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.46770 -37.05769 -35.59559 -33.31861 -30.24282 -29.52442 -26.15311 -21.99362 -20.93559 -19.54507 -17.27432 -16.28269 -15.72675 -15.00048 -14.89154 -13.99292 -13.73461 -13.47070 -12.93072 -12.88034 -12.69516 -12.50031 -12.14454 -11.78517 -11.13191 -10.71072 -9.99988 -9.10722 -8.52665 -6.34061 1.24804 1.36339 1.52895 1.63053 1.70236 2.07345 2.17550 2.85486 3.02647 4.24092 4.34306 4.70969 4.89252 4.97938 5.10025 5.11024 5.33284 5.86567 6.12153 6.65234 7.33344 7.54927 8.46359 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.079983 B = 0.011789 C = 0.010332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.988645 B = 2374.487550 C = 2709.325284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 C -0.020 4.020 3 N -0.302 5.302 4 N -0.168 5.168 5 C -0.359 4.359 6 H 0.138 0.862 7 C -0.001 4.001 8 N -0.819 5.819 9 Si 1.019 2.981 10 H -0.254 1.254 11 H -0.274 1.274 12 H -0.255 1.255 13 C -0.055 4.055 14 C -0.212 4.212 15 Cl -0.062 7.062 16 H 0.073 0.927 17 H 0.083 0.917 18 H 0.061 0.939 19 H 0.279 0.721 20 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.827 -3.790 0.008 3.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.176 4.176 3 N -0.134 5.134 4 N 0.065 4.935 5 C -0.490 4.490 6 H 0.156 0.844 7 C -0.213 4.213 8 N -0.447 5.447 9 Si 0.838 3.162 10 H -0.178 1.178 11 H -0.199 1.199 12 H -0.179 1.179 13 C -0.205 4.205 14 C -0.253 4.253 15 Cl -0.034 7.034 16 H 0.091 0.909 17 H 0.101 0.899 18 H 0.080 0.920 19 H 0.089 0.911 20 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 0.704 -2.421 0.012 2.521 hybrid contribution 0.436 -0.594 -0.005 0.737 sum 1.140 -3.015 0.006 3.223 Atomic orbital electron populations 1.19948 0.85769 1.02556 1.02457 1.22816 0.98301 0.89840 1.06685 1.78187 0.86537 1.20526 1.28101 1.44913 1.05069 1.03437 1.40038 1.20626 0.85036 0.88813 1.54512 0.84435 1.26845 1.01834 0.98824 0.93812 1.70345 1.24307 1.13399 1.36626 0.84650 0.75533 0.75809 0.80232 1.17847 1.19883 1.17861 1.22228 0.98274 0.85331 1.14709 1.20230 0.92522 0.85125 1.27383 1.98179 1.89953 1.17084 1.98223 0.90874 0.89863 0.92039 0.91091 0.80483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.88 10.31 71.24 0.73 -1.15 14 2 C -0.02 -1.00 7.22 43.17 0.31 -0.68 14 3 N -0.30 -17.36 10.41 -47.12 -0.49 -17.85 14 4 N -0.17 -9.34 3.74 -190.35 -0.71 -10.05 14 5 C -0.36 -19.02 10.26 84.01 0.86 -18.16 14 6 H 0.14 6.40 7.83 -2.91 -0.02 6.38 14 7 C 0.00 -0.04 5.50 84.96 0.47 0.43 14 8 N -0.82 -45.82 11.82 21.66 0.26 -45.56 14 9 Si 1.02 37.88 29.55 68.60 2.03 39.90 14 10 H -0.25 -8.91 7.11 99.48 0.71 -8.20 14 11 H -0.27 -9.98 7.11 99.48 0.71 -9.27 14 12 H -0.25 -8.92 7.11 99.48 0.71 -8.21 14 13 C -0.06 -2.67 11.44 83.31 0.95 -1.71 14 14 C -0.21 -9.82 6.64 22.07 0.15 -9.67 14 15 Cl -0.06 -2.30 29.01 -2.72 -0.08 -2.38 14 16 H 0.07 2.58 8.14 -2.39 -0.02 2.56 14 17 H 0.08 2.79 8.00 -2.39 -0.02 2.77 14 18 H 0.06 2.34 8.14 -2.39 -0.02 2.32 14 19 H 0.28 14.30 8.31 -92.71 -0.77 13.53 14 20 H 0.18 7.30 8.06 -2.91 -0.02 7.27 14 Total: -1.00 -63.45 205.70 5.72 -57.73 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 1.25 Total: 9.15 kcal Atomic # 6 Polarization: -34.42 SS G_CDS: 3.47 Total: -30.95 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -0.95 Total: -73.46 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.90 kcal Atomic # 17 Polarization: -2.30 SS G_CDS: -0.08 Total: -2.38 kcal Total: -63.45 5.72 -57.73 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002537503.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.468 kcal (2) G-P(sol) polarization free energy of solvation -63.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds