Wall clock time and date at job start Mon Mar 30 2020 01:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35302 * 126.21635 * 2 1 4 4 Cl 1.73603 * 126.01518 * 359.97438 * 3 2 1 5 5 C 1.40219 * 107.96313 * 179.97438 * 3 2 1 6 6 N 1.30936 * 108.40839 * 0.02562 * 5 3 2 7 7 N 1.36351 * 126.21445 * 180.02562 * 2 1 3 8 8 C 1.37380 * 126.11415 * 0.03856 * 7 2 1 9 9 H 1.08001 * 120.00254 * 359.97438 * 8 7 2 10 10 C 1.38987 * 120.00275 * 179.97438 * 8 7 2 11 11 N 1.31291 * 119.99798 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 120.00314 * 179.97438 * 10 8 7 13 13 H 1.48508 * 109.46813 * 90.00019 * 12 10 8 14 14 H 1.48493 * 109.47490 * 209.99868 * 12 10 8 15 15 H 1.48497 * 109.46756 * 330.00420 * 12 10 8 16 16 H 1.08994 * 109.47593 * 269.99852 * 1 2 3 17 17 H 1.09007 * 109.47336 * 29.99922 * 1 2 3 18 18 H 1.09003 * 109.47530 * 149.99568 * 1 2 3 19 19 H 1.08005 * 125.79259 * 180.02562 * 5 3 2 20 20 H 0.97009 * 119.99980 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3063 1.0916 0.0000 4 17 1.7765 2.7448 -0.0006 5 6 3.6380 0.6524 0.0006 6 7 3.6415 -0.6569 0.0004 7 7 2.3125 -1.1001 -0.0005 8 6 1.8955 -2.4091 -0.0018 9 1 0.8404 -2.6397 -0.0022 10 6 2.8313 -3.4366 -0.0027 11 7 4.1140 -3.1563 -0.0028 12 14 2.2643 -5.2166 -0.0038 13 1 2.1137 -5.6872 -1.4043 14 1 3.2694 -6.0568 0.6954 15 1 0.9589 -5.3205 0.6963 16 1 -0.3634 0.0000 1.0276 17 1 -0.3634 0.8900 -0.5138 18 1 -0.3634 -0.8899 -0.5139 19 1 4.5122 1.2866 0.0011 20 1 4.7672 -3.8735 -0.0031 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002537505.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:41 Heat of formation + Delta-G solvation = 41.282568 kcal Electronic energy + Delta-G solvation = -9281.440500 eV Core-core repulsion = 7311.891362 eV Total energy + Delta-G solvation = -1969.549139 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.025 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.50949 -37.03937 -35.44419 -33.18731 -31.65404 -27.37122 -26.97961 -22.49449 -20.94978 -19.01142 -17.31765 -16.28460 -15.80344 -15.16366 -14.87371 -13.99345 -13.51663 -13.45905 -13.01098 -12.86480 -12.65741 -12.50934 -12.08901 -11.74360 -11.24592 -10.74319 -10.12291 -8.95981 -8.52053 -6.33493 1.22827 1.37045 1.54712 1.64092 1.68621 2.12983 2.17584 2.85199 3.03399 4.23850 4.43053 4.60104 4.84881 4.93005 5.03080 5.21566 5.48064 5.84253 6.08533 6.65330 7.36002 7.54707 8.47390 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.082540 B = 0.012326 C = 0.010787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.147612 B = 2271.065316 C = 2595.069057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.031 4.031 3 C -0.214 4.214 4 Cl -0.063 7.063 5 C -0.041 4.041 6 N -0.307 5.307 7 N -0.165 5.165 8 C -0.353 4.353 9 H 0.139 0.861 10 C -0.002 4.002 11 N -0.821 5.821 12 Si 1.017 2.983 13 H -0.263 1.263 14 H -0.275 1.275 15 H -0.245 1.245 16 H 0.074 0.926 17 H 0.084 0.916 18 H 0.069 0.931 19 H 0.179 0.821 20 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.091 1.600 0.012 6.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.163 4.163 3 C -0.255 4.255 4 Cl -0.035 7.035 5 C -0.216 4.216 6 N -0.136 5.136 7 N 0.067 4.933 8 C -0.484 4.484 9 H 0.156 0.844 10 C -0.214 4.214 11 N -0.449 5.449 12 Si 0.836 3.164 13 H -0.188 1.188 14 H -0.199 1.199 15 H -0.168 1.168 16 H 0.093 0.907 17 H 0.103 0.897 18 H 0.088 0.912 19 H 0.196 0.804 20 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.172 0.572 0.016 5.204 hybrid contribution -0.149 0.396 -0.009 0.424 sum -5.321 0.968 0.007 5.409 Atomic orbital electron populations 1.20139 0.85787 1.03220 1.02738 1.21092 0.95720 0.86161 1.13311 1.20082 0.92689 0.84862 1.27832 1.98178 1.90494 1.16625 1.98234 1.23929 0.96674 0.93243 1.07754 1.78203 0.97949 1.09783 1.27675 1.44928 1.02912 1.05136 1.40363 1.20607 0.95813 0.77982 1.53991 0.84372 1.26849 0.94576 1.06090 0.93908 1.70355 1.02094 1.35549 1.36883 0.84619 0.79172 0.73297 0.79349 1.18802 1.19947 1.16818 0.90713 0.89699 0.91230 0.80409 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.19 9.88 71.23 0.70 -1.49 14 2 C -0.03 -1.49 6.93 41.18 0.29 -1.20 14 3 C -0.21 -9.91 6.65 22.07 0.15 -9.76 14 4 Cl -0.06 -2.33 28.88 -2.72 -0.08 -2.41 14 5 C -0.04 -2.04 12.02 85.31 1.03 -1.01 14 6 N -0.31 -17.72 10.41 -56.74 -0.59 -18.31 14 7 N -0.17 -9.10 3.74 -178.63 -0.67 -9.76 14 8 C -0.35 -18.50 9.97 84.00 0.84 -17.66 14 9 H 0.14 6.36 7.07 -2.91 -0.02 6.34 14 10 C 0.00 -0.11 5.50 84.95 0.47 0.36 14 11 N -0.82 -45.97 11.82 21.66 0.26 -45.72 14 12 Si 1.02 37.71 29.55 68.60 2.03 39.74 14 13 H -0.26 -9.41 7.11 99.48 0.71 -8.70 14 14 H -0.27 -10.03 7.11 99.48 0.71 -9.33 14 15 H -0.25 -8.30 7.11 99.48 0.71 -7.59 14 16 H 0.07 2.46 8.14 -2.39 -0.02 2.44 14 17 H 0.08 2.70 7.91 -2.38 -0.02 2.68 14 18 H 0.07 2.38 7.38 -2.39 -0.02 2.36 14 19 H 0.18 7.76 8.06 -2.91 -0.02 7.73 14 20 H 0.28 14.28 8.31 -92.70 -0.77 13.51 14 Total: -1.00 -63.45 203.53 5.66 -57.78 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.25 Total: 9.45 kcal Atomic # 6 Polarization: -34.23 SS G_CDS: 3.47 Total: -30.76 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -1.00 Total: -73.79 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.74 kcal Atomic # 17 Polarization: -2.33 SS G_CDS: -0.08 Total: -2.41 kcal Total: -63.45 5.66 -57.78 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002537505.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.066 kcal (2) G-P(sol) polarization free energy of solvation -63.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds