Wall clock time and date at job start Mon Mar 30 2020 01:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99515 * 2 1 4 4 H 1.48502 * 109.46517 * 239.99664 * 3 2 1 5 5 H 1.48495 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47093 * 119.99648 * 3 2 1 7 7 C 1.37870 * 120.00494 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00258 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99924 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47218 * 179.97438 * 9 7 2 11 11 C 1.37566 * 120.00013 * 180.02562 * 10 9 7 12 12 N 1.28263 * 125.05790 * 0.02562 * 11 10 9 13 13 C 1.44598 * 119.97680 * 180.10509 * 12 11 10 14 14 C 1.53677 * 111.15247 * 359.89468 * 13 12 11 15 15 S 1.76759 * 125.01298 * 180.02562 * 11 10 9 16 16 H 0.96994 * 120.00867 * 0.02562 * 1 2 3 17 17 H 1.09005 * 109.47020 * 59.99908 * 9 7 2 18 18 H 1.09001 * 109.47006 * 300.00013 * 9 7 2 19 19 H 0.97000 * 119.99773 * 0.02562 * 10 9 7 20 20 H 1.09002 * 109.13726 * 239.47488 * 13 12 11 21 21 H 1.09001 * 109.13413 * 120.30851 * 13 12 11 22 22 H 1.08993 * 110.65513 * 118.49811 * 14 13 12 23 23 H 1.09000 * 110.65666 * 241.60640 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7447 -4.9096 0.0000 12 7 0.5093 -5.2543 -0.0010 13 6 0.1500 -6.6550 0.0008 14 6 1.4005 -7.5482 0.0012 15 16 2.7717 -6.3483 0.0006 16 1 -0.4851 0.8399 -0.0004 17 1 0.6248 -2.5571 -0.8897 18 1 0.6242 -2.5567 0.8903 19 1 3.1569 -3.4353 0.0009 20 1 -0.4443 -6.8726 -0.8866 21 1 -0.4433 -6.8705 0.8895 22 1 1.4310 -8.1666 0.8982 23 1 1.4310 -8.1674 -0.8953 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005282926.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:26 Heat of formation + Delta-G solvation = 17.017112 kcal Electronic energy + Delta-G solvation = -9112.883379 eV Core-core repulsion = 7280.158812 eV Total energy + Delta-G solvation = -1832.724567 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.052 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -37.50836 -34.82982 -32.56911 -29.51637 -27.02831 -23.97001 -22.71693 -19.25618 -18.23178 -16.21951 -15.45481 -14.95447 -14.75976 -13.87835 -13.29948 -13.20763 -12.39692 -11.99301 -11.96477 -11.10875 -10.93350 -10.67626 -10.64014 -10.24492 -9.40483 -8.64303 -8.58687 -7.76516 -7.25592 -6.16750 -4.23573 1.65884 2.31396 2.86553 3.26687 3.31166 3.33079 4.14072 4.36981 4.75037 4.94335 5.19499 5.41586 5.73007 5.92127 5.94960 7.20491 7.52419 7.57776 7.74135 7.96235 8.34566 8.67601 8.92758 9.41975 10.93231 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.096124 B = 0.008675 C = 0.008016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 291.220082 B = 3226.910604 C = 3492.323776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.677 5.677 11 C 0.452 3.548 12 N -0.619 5.619 13 C 0.074 3.926 14 C -0.101 4.101 15 S -0.255 6.255 16 H 0.267 0.733 17 H 0.028 0.972 18 H 0.028 0.972 19 H 0.405 0.595 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.101 0.899 23 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.099 -10.646 0.006 11.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.138 4.138 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.584 4.584 8 H 0.081 0.919 9 C 0.143 3.857 10 N -0.314 5.314 11 C 0.064 3.936 12 N -0.354 5.354 13 C -0.060 4.060 14 C -0.252 4.252 15 S -0.030 6.030 16 H 0.076 0.924 17 H 0.046 0.954 18 H 0.046 0.954 19 H 0.240 0.760 20 H 0.099 0.901 21 H 0.099 0.901 22 H 0.120 0.880 23 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.133 -10.254 0.005 10.722 hybrid contribution 0.118 0.530 0.000 0.543 sum 3.251 -9.724 0.005 10.253 Atomic orbital electron populations 1.69959 1.06075 1.27448 1.48785 1.24919 0.94924 0.99363 0.94641 0.86456 0.79409 0.82199 0.78749 1.20037 1.21043 1.20032 1.21188 0.93358 0.90376 1.53437 0.91888 1.19193 0.87787 0.80895 0.97813 1.44774 1.10331 1.00152 1.76135 1.23732 0.88196 0.89530 0.92158 1.69891 1.15013 1.14843 1.35617 1.22408 0.96337 0.84242 1.03057 1.24808 0.94823 0.99409 1.06190 1.86447 1.18547 1.03981 1.94015 0.92377 0.95429 0.95422 0.75957 0.90051 0.90058 0.88048 0.88048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.94 13.29 55.43 0.74 -25.20 14 2 C 0.07 1.81 5.46 -17.82 -0.10 1.72 14 3 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 14 4 H -0.27 -6.25 7.11 56.52 0.40 -5.84 14 5 H -0.28 -6.54 7.11 56.52 0.40 -6.13 14 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 14 7 C -0.55 -14.89 9.28 -34.44 -0.32 -15.21 14 8 H 0.06 1.62 7.60 -52.49 -0.40 1.22 14 9 C 0.27 7.02 5.68 -5.19 -0.03 7.00 14 10 N -0.68 -14.95 5.66 -62.50 -0.35 -15.31 14 11 C 0.45 9.30 8.33 -89.84 -0.75 8.55 14 12 N -0.62 -12.91 10.37 -62.20 -0.65 -13.55 14 13 C 0.07 1.13 7.54 -4.71 -0.04 1.09 14 14 C -0.10 -1.29 7.48 37.51 0.28 -1.01 14 15 S -0.25 -4.21 23.28 -107.50 -2.50 -6.71 14 16 H 0.27 7.34 8.31 -40.82 -0.34 7.00 14 17 H 0.03 0.80 8.14 -51.93 -0.42 0.38 14 18 H 0.03 0.80 8.14 -51.93 -0.42 0.38 14 19 H 0.40 8.10 8.44 -40.82 -0.34 7.75 14 20 H 0.08 1.13 8.14 -51.93 -0.42 0.71 14 21 H 0.08 1.13 8.14 -51.93 -0.42 0.71 14 22 H 0.10 1.08 8.14 -51.93 -0.42 0.66 14 23 H 0.10 1.08 8.14 -51.93 -0.42 0.66 14 LS Contribution 220.43 15.07 3.32 3.32 Total: -1.00 -29.93 220.43 -7.83 -37.75 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -2.41 Total: 1.65 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -0.95 Total: 2.13 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.26 Total: -54.06 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -4.21 SS G_CDS: -2.50 Total: -6.71 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -29.93 -7.83 -37.75 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005282926.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.772 kcal (2) G-P(sol) polarization free energy of solvation -29.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds