Wall clock time and date at job start Mon Mar 30 2020 02:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.50686 * 2 1 4 4 O 1.43365 * 109.63667 * 120.32050 * 2 1 3 5 5 C 1.44185 * 107.29293 * 119.21005 * 4 2 1 6 6 C 1.54919 * 103.07659 * 338.56311 * 5 4 2 7 7 H 1.09000 * 110.97843 * 277.41961 * 6 5 4 8 8 C 1.53000 * 110.97616 * 153.66693 * 6 5 4 9 9 C 1.50703 * 109.46912 * 175.00384 * 8 6 5 10 10 H 1.07996 * 119.99751 * 0.02562 * 9 8 6 11 11 C 1.37877 * 120.00001 * 180.02562 * 9 8 6 12 12 N 1.31517 * 120.00094 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99955 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46999 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.46942 * 119.99666 * 13 11 9 16 16 H 1.48504 * 109.46979 * 239.99580 * 13 11 9 17 17 O 1.43750 * 109.63444 * 239.68469 * 2 1 3 18 18 H 1.08997 * 109.47145 * 301.13439 * 1 2 3 19 19 H 1.09001 * 109.47151 * 61.13333 * 1 2 3 20 20 H 1.08999 * 109.47034 * 181.13474 * 1 2 3 21 21 H 1.09007 * 109.47203 * 178.86588 * 3 2 1 22 22 H 1.09002 * 109.47477 * 298.86573 * 3 2 1 23 23 H 1.08997 * 109.47299 * 58.86640 * 3 2 1 24 24 H 1.09003 * 110.69580 * 220.17043 * 5 4 2 25 25 H 1.09001 * 110.84725 * 97.03040 * 5 4 2 26 26 H 1.09002 * 109.47398 * 295.00462 * 8 6 5 27 27 H 1.09001 * 109.47194 * 55.00642 * 8 6 5 28 28 H 0.97000 * 120.00333 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 8 2.0118 -0.6817 1.1656 5 6 2.7886 -1.8087 0.7125 6 6 2.2652 -2.0391 -0.7273 7 1 1.3461 -2.6249 -0.7194 8 6 3.3311 -2.7089 -1.5968 9 6 2.7482 -3.0279 -2.9495 10 1 1.7204 -2.7774 -3.1672 11 6 3.5269 -3.6394 -3.9090 12 7 4.7786 -3.9440 -3.6440 13 14 2.8045 -4.0341 -5.5858 14 1 1.3872 -3.5930 -5.6305 15 1 3.5774 -3.3251 -6.6371 16 1 2.8744 -5.4985 -5.8227 17 8 2.0130 -0.6834 -1.1688 18 1 -0.3633 0.5313 0.8796 19 1 -0.3633 0.4961 -0.9000 20 1 -0.3633 -1.0275 0.0204 21 1 3.1308 1.4416 0.0203 22 1 1.6946 1.9504 -0.9000 23 1 1.6614 1.9621 0.8796 24 1 2.5989 -2.6827 1.3357 25 1 3.8516 -1.5681 0.7021 26 1 4.1790 -2.0345 -1.7165 27 1 3.6641 -3.6300 -1.1184 28 1 5.3263 -4.3745 -4.3188 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021992782.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:35 Heat of formation + Delta-G solvation = -106.336673 kcal Electronic energy + Delta-G solvation = -11823.897658 eV Core-core repulsion = 9646.611542 eV Total energy + Delta-G solvation = -2177.286116 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.93600 -34.54305 -33.56278 -32.26651 -29.62844 -27.16603 -26.41975 -23.22660 -20.71268 -20.47325 -16.94304 -16.06748 -15.75183 -14.87721 -14.28306 -14.20177 -13.29127 -12.97037 -12.39547 -12.20319 -12.03961 -11.81878 -11.62231 -11.34503 -11.22827 -11.14722 -10.58041 -10.46391 -9.67631 -9.42450 -9.13485 -8.99098 -8.40898 -6.03220 -4.04604 3.31398 3.38687 3.44000 3.97898 4.44751 4.53772 5.19257 5.22486 5.33876 5.39015 5.62598 5.77304 5.79968 5.85355 5.94375 6.04784 6.21559 6.33695 6.45206 6.45541 6.77034 7.42274 7.57016 7.85748 7.93754 8.33895 8.99469 9.58820 11.08427 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.060968 B = 0.010445 C = 0.009724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.145136 B = 2680.071226 C = 2878.800229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.241 3.759 3 C -0.150 4.150 4 O -0.392 6.392 5 C 0.020 3.980 6 C 0.059 3.941 7 H 0.070 0.930 8 C 0.027 3.973 9 C -0.513 4.513 10 H 0.058 0.942 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.895 3.105 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.284 1.284 17 O -0.356 6.356 18 H 0.065 0.935 19 H 0.071 0.929 20 H 0.061 0.939 21 H 0.064 0.936 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.030 0.970 27 H 0.036 0.964 28 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.515 5.923 6.829 10.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.164 3.836 3 C -0.208 4.208 4 O -0.314 6.314 5 C -0.056 4.056 6 C 0.002 3.998 7 H 0.088 0.912 8 C -0.010 4.010 9 C -0.551 4.551 10 H 0.077 0.923 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.723 3.277 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 O -0.277 6.277 18 H 0.084 0.916 19 H 0.090 0.910 20 H 0.080 0.920 21 H 0.083 0.917 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.109 0.891 25 H 0.091 0.909 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.377 6.003 6.743 10.508 hybrid contribution -0.301 -0.398 -0.944 1.067 sum -5.677 5.604 5.800 9.863 Atomic orbital electron populations 1.22342 0.94829 1.02969 1.02356 1.23289 0.92466 0.91527 0.76350 1.22025 1.02382 0.94099 1.02281 1.88756 1.69721 1.42683 1.30253 1.24343 0.96331 0.88534 0.96386 1.24253 1.00215 0.83351 0.91947 0.91162 1.19180 0.92482 0.95217 0.94075 1.21157 0.98086 1.38380 0.97519 0.92328 1.25002 0.94846 0.95778 0.98857 1.69961 1.06865 1.42277 1.34567 0.86479 0.79337 0.77860 0.84019 1.19694 1.20956 1.21019 1.89382 1.85377 1.22889 1.30034 0.91634 0.90968 0.91996 0.91652 0.91034 0.91380 0.89142 0.90908 0.95217 0.94635 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 9.19 37.16 0.34 -2.19 15 2 C 0.24 4.31 1.47 -26.73 -0.04 4.27 15 3 C -0.15 -2.26 9.24 37.16 0.34 -1.92 15 4 O -0.39 -7.21 10.87 -59.04 -0.64 -7.85 15 5 C 0.02 0.37 7.54 38.17 0.29 0.66 15 6 C 0.06 1.28 3.38 -25.72 -0.09 1.20 15 7 H 0.07 1.49 8.14 -51.93 -0.42 1.07 15 8 C 0.03 0.71 4.75 -27.88 -0.13 0.57 15 9 C -0.51 -14.69 9.07 -34.44 -0.31 -15.00 15 10 H 0.06 1.67 7.74 -52.49 -0.41 1.26 15 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 12 N -0.90 -26.87 13.29 55.43 0.74 -26.14 15 13 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 15 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 17 O -0.36 -7.85 10.68 -59.04 -0.63 -8.48 15 18 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 19 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 20 H 0.06 0.96 8.14 -51.93 -0.42 0.53 15 21 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 22 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 23 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 24 H 0.09 1.44 8.14 -51.93 -0.42 1.02 15 25 H 0.07 1.33 8.03 -51.93 -0.42 0.91 15 26 H 0.03 0.82 8.14 -51.93 -0.42 0.40 15 27 H 0.04 0.93 8.14 -51.93 -0.42 0.51 15 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 LS Contribution 241.28 15.07 3.64 3.64 Total: -1.00 -30.75 241.28 -5.80 -36.55 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -4.19 Total: -3.69 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 0.30 Total: -10.89 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.74 Total: -26.14 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -1.27 Total: -16.34 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.75 -5.80 -36.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021992782.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.787 kcal (2) G-P(sol) polarization free energy of solvation -30.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds