Wall clock time and date at job start Mon Mar 30 2020 02:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.50686 * 2 1 4 4 O 1.43365 * 109.63667 * 120.32050 * 2 1 3 5 5 C 1.44185 * 107.29293 * 119.21005 * 4 2 1 6 6 C 1.54919 * 103.07659 * 338.56311 * 5 4 2 7 7 H 1.09000 * 110.97843 * 277.41961 * 6 5 4 8 8 C 1.53000 * 110.97616 * 153.66693 * 6 5 4 9 9 C 1.50703 * 109.46912 * 175.00384 * 8 6 5 10 10 H 1.07996 * 119.99751 * 0.02562 * 9 8 6 11 11 C 1.37877 * 120.00001 * 180.02562 * 9 8 6 12 12 N 1.31517 * 120.00094 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99955 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46999 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.46942 * 119.99666 * 13 11 9 16 16 H 1.48504 * 109.46979 * 239.99580 * 13 11 9 17 17 O 1.43750 * 109.63444 * 239.68469 * 2 1 3 18 18 H 1.08997 * 109.47145 * 301.13439 * 1 2 3 19 19 H 1.09001 * 109.47151 * 61.13333 * 1 2 3 20 20 H 1.08999 * 109.47034 * 181.13474 * 1 2 3 21 21 H 1.09007 * 109.47203 * 178.86588 * 3 2 1 22 22 H 1.09002 * 109.47477 * 298.86573 * 3 2 1 23 23 H 1.08997 * 109.47299 * 58.86640 * 3 2 1 24 24 H 1.09003 * 110.69580 * 220.17043 * 5 4 2 25 25 H 1.09001 * 110.84725 * 97.03040 * 5 4 2 26 26 H 1.09002 * 109.47398 * 295.00462 * 8 6 5 27 27 H 1.09001 * 109.47194 * 55.00642 * 8 6 5 28 28 H 0.97000 * 120.00333 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 8 2.0118 -0.6817 1.1656 5 6 2.7886 -1.8087 0.7125 6 6 2.2652 -2.0391 -0.7273 7 1 1.3461 -2.6249 -0.7194 8 6 3.3311 -2.7089 -1.5968 9 6 2.7482 -3.0279 -2.9495 10 1 1.7204 -2.7774 -3.1672 11 6 3.5269 -3.6394 -3.9090 12 7 4.7786 -3.9440 -3.6440 13 14 2.8045 -4.0341 -5.5858 14 1 1.3872 -3.5930 -5.6305 15 1 3.5774 -3.3251 -6.6371 16 1 2.8744 -5.4985 -5.8227 17 8 2.0130 -0.6834 -1.1688 18 1 -0.3633 0.5313 0.8796 19 1 -0.3633 0.4961 -0.9000 20 1 -0.3633 -1.0275 0.0204 21 1 3.1308 1.4416 0.0203 22 1 1.6946 1.9504 -0.9000 23 1 1.6614 1.9621 0.8796 24 1 2.5989 -2.6827 1.3357 25 1 3.8516 -1.5681 0.7021 26 1 4.1790 -2.0345 -1.7165 27 1 3.6641 -3.6300 -1.1184 28 1 5.3263 -4.3745 -4.3188 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021992782.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:35 Heat of formation + Delta-G solvation = -126.544159 kcal Electronic energy + Delta-G solvation = -11824.773920 eV Core-core repulsion = 9646.611542 eV Total energy + Delta-G solvation = -2178.162378 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.44403 -36.20616 -35.36807 -33.98616 -31.41274 -28.40350 -28.18486 -25.15020 -22.40981 -21.97037 -18.77480 -17.99280 -17.25350 -16.65354 -15.96244 -15.68459 -14.85905 -14.50779 -14.05253 -13.84368 -13.61221 -13.13422 -13.08470 -13.00774 -12.91097 -12.63961 -12.51886 -12.30155 -11.66080 -11.19405 -10.94459 -10.62594 -10.51962 -8.23329 -6.33039 1.39107 1.40028 1.53385 2.39763 2.51723 3.05952 3.16185 3.72916 3.93146 3.95864 4.10779 4.31504 4.52571 4.65706 4.69683 4.75823 4.79190 4.86160 5.07009 5.16298 5.25635 5.33294 5.53434 5.73008 6.15211 6.29422 6.78542 7.34997 8.88835 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.060968 B = 0.010445 C = 0.009724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.145136 B = 2680.071226 C = 2878.800229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.225 3.775 3 C -0.148 4.148 4 O -0.393 6.393 5 C 0.029 3.971 6 C 0.062 3.938 7 H 0.074 0.926 8 C 0.033 3.967 9 C -0.535 4.535 10 H 0.054 0.946 11 C 0.002 3.998 12 N -0.931 5.931 13 Si 0.966 3.034 14 H -0.266 1.266 15 H -0.278 1.278 16 H -0.273 1.273 17 O -0.387 6.387 18 H 0.092 0.908 19 H 0.079 0.921 20 H 0.053 0.947 21 H 0.053 0.947 22 H 0.080 0.920 23 H 0.096 0.904 24 H 0.118 0.882 25 H 0.070 0.930 26 H -0.001 1.001 27 H 0.026 0.974 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.747 6.388 6.955 11.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.149 3.851 3 C -0.206 4.206 4 O -0.315 6.315 5 C -0.048 4.048 6 C 0.005 3.995 7 H 0.091 0.909 8 C -0.004 4.004 9 C -0.573 4.573 10 H 0.073 0.927 11 C -0.196 4.196 12 N -0.572 5.572 13 Si 0.790 3.210 14 H -0.190 1.190 15 H -0.204 1.204 16 H -0.199 1.199 17 O -0.308 6.308 18 H 0.110 0.890 19 H 0.098 0.902 20 H 0.072 0.928 21 H 0.072 0.928 22 H 0.099 0.901 23 H 0.114 0.886 24 H 0.136 0.864 25 H 0.088 0.912 26 H 0.018 0.982 27 H 0.044 0.956 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.617 6.476 6.885 11.538 hybrid contribution 0.096 -0.501 -0.951 1.080 sum -6.521 5.975 5.934 10.650 Atomic orbital electron populations 1.22331 0.92576 1.03088 1.04062 1.23814 0.94243 0.92215 0.74853 1.22064 1.01744 0.92647 1.04116 1.88744 1.69784 1.42558 1.30390 1.24278 0.96127 0.89674 0.94685 1.23996 0.99018 0.83473 0.93004 0.90853 1.18992 0.92754 0.94495 0.94174 1.21504 0.98113 1.38670 0.99032 0.92733 1.25911 0.95195 0.95458 1.02986 1.70071 1.08155 1.42860 1.36072 0.85389 0.78697 0.78070 0.78839 1.19008 1.20414 1.19872 1.89334 1.86015 1.22967 1.32521 0.88969 0.90163 0.92755 0.92785 0.90120 0.88567 0.86372 0.91196 0.98216 0.95634 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.53 9.19 71.98 0.66 -3.87 15 2 C 0.23 7.68 1.47 30.59 0.04 7.73 15 3 C -0.15 -4.17 9.24 71.98 0.66 -3.50 15 4 O -0.39 -13.70 10.87 -126.22 -1.37 -15.07 15 5 C 0.03 1.02 7.54 72.64 0.55 1.57 15 6 C 0.06 2.69 3.38 31.25 0.11 2.80 15 7 H 0.07 3.10 8.14 -2.39 -0.02 3.08 15 8 C 0.03 1.74 4.75 29.85 0.14 1.89 15 9 C -0.54 -31.05 9.07 25.60 0.23 -30.82 15 10 H 0.05 3.13 7.74 -2.91 -0.02 3.11 15 11 C 0.00 0.14 5.46 84.65 0.46 0.60 15 12 N -0.93 -56.44 13.29 21.45 0.28 -56.15 15 13 Si 0.97 44.83 29.54 68.60 2.03 46.86 15 14 H -0.27 -11.96 7.11 99.48 0.71 -11.25 15 15 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 16 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 17 O -0.39 -16.99 10.68 -126.22 -1.35 -18.34 15 18 H 0.09 2.05 8.14 -2.39 -0.02 2.04 15 19 H 0.08 2.08 8.14 -2.39 -0.02 2.07 15 20 H 0.05 1.58 8.14 -2.39 -0.02 1.56 15 21 H 0.05 1.62 8.14 -2.38 -0.02 1.60 15 22 H 0.08 2.09 8.14 -2.39 -0.02 2.08 15 23 H 0.10 2.14 8.14 -2.39 -0.02 2.12 15 24 H 0.12 3.54 8.14 -2.39 -0.02 3.52 15 25 H 0.07 2.53 8.03 -2.39 -0.02 2.51 15 26 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 15 27 H 0.03 1.38 8.14 -2.39 -0.02 1.36 15 28 H 0.27 15.02 8.31 -92.71 -0.77 14.25 15 Total: -1.00 -65.29 241.28 3.57 -61.72 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: 1.11 Total: 4.60 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: 2.86 Total: -23.61 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.28 Total: -56.15 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -2.72 Total: -33.41 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -65.29 3.57 -61.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021992782.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.823 kcal (2) G-P(sol) polarization free energy of solvation -65.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds