Wall clock time and date at job start Mon Mar 30 2020 02:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.62992 * 2 1 4 4 O 1.43367 * 109.63221 * 120.39208 * 2 1 3 5 5 C 1.44201 * 107.28758 * 120.54716 * 4 2 1 6 6 C 1.54903 * 103.07826 * 21.43678 * 5 4 2 7 7 H 1.09003 * 110.97945 * 82.54573 * 6 5 4 8 8 C 1.52996 * 110.97937 * 206.29129 * 6 5 4 9 9 C 1.50700 * 109.47262 * 184.99976 * 8 6 5 10 10 H 1.07998 * 119.99937 * 0.02562 * 9 8 6 11 11 C 1.37879 * 120.00248 * 180.02562 * 9 8 6 12 12 N 1.31523 * 119.99601 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00371 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46841 * 89.99891 * 13 11 9 15 15 H 1.48498 * 109.47384 * 210.00017 * 13 11 9 16 16 H 1.48499 * 109.46861 * 330.00193 * 13 11 9 17 17 O 1.43756 * 109.63163 * 239.60444 * 2 1 3 18 18 H 1.09002 * 109.47153 * 60.70058 * 1 2 3 19 19 H 1.09001 * 109.46832 * 300.70249 * 1 2 3 20 20 H 1.09004 * 109.47261 * 180.70230 * 1 2 3 21 21 H 1.08995 * 109.47111 * 59.30148 * 3 2 1 22 22 H 1.09006 * 109.47162 * 179.29922 * 3 2 1 23 23 H 1.09003 * 109.46773 * 299.29676 * 3 2 1 24 24 H 1.09001 * 110.69276 * 139.83633 * 5 4 2 25 25 H 1.09003 * 110.69190 * 262.86196 * 5 4 2 26 26 H 1.08991 * 109.47511 * 305.00333 * 8 6 5 27 27 H 1.09000 * 109.46916 * 65.00341 * 8 6 5 28 28 H 0.97003 * 119.99297 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 8 2.0117 -0.6832 1.1648 5 6 2.8147 -1.7912 0.7102 6 6 3.2065 -1.3731 -0.7289 7 1 4.0653 -0.7018 -0.7202 8 6 3.4830 -2.6002 -1.5998 9 6 3.9783 -2.1555 -2.9518 10 1 4.0855 -1.1028 -3.1682 11 6 4.2945 -3.0924 -3.9127 12 7 4.1634 -4.3743 -3.6494 13 14 4.9077 -2.5411 -5.5888 14 1 6.3886 -2.4322 -5.5628 15 1 4.5024 -3.5345 -6.6155 16 1 4.3198 -1.2184 -5.9204 17 8 2.0130 -0.6851 -1.1679 18 1 -0.3633 0.5029 -0.8962 19 1 -0.3633 0.5247 0.8836 20 1 -0.3634 -1.0276 0.0126 21 1 1.6719 1.9595 0.8836 22 1 3.1340 1.4381 0.0126 23 1 1.6923 1.9522 -0.8963 24 1 3.7019 -1.9051 1.3333 25 1 2.2311 -2.7118 0.7014 26 1 4.2402 -3.2218 -1.1220 27 1 2.5645 -3.1746 -1.7203 28 1 4.3863 -5.0334 -4.3253 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035566903.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:37 Heat of formation + Delta-G solvation = -106.352414 kcal Electronic energy + Delta-G solvation = -11824.705865 eV Core-core repulsion = 9647.419066 eV Total energy + Delta-G solvation = -2177.286799 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.94706 -34.54847 -33.55766 -32.26567 -29.62538 -27.17256 -26.41695 -23.22546 -20.70966 -20.47940 -16.94609 -16.06430 -15.75062 -14.87609 -14.28544 -14.20809 -13.29469 -12.96566 -12.39031 -12.20495 -12.03693 -11.81749 -11.62029 -11.34737 -11.23105 -11.13468 -10.58068 -10.46888 -9.67581 -9.42296 -9.14376 -8.99086 -8.40305 -6.02951 -4.04375 3.32289 3.38399 3.43427 3.97772 4.44884 4.53934 5.19157 5.22590 5.34052 5.39313 5.62810 5.77318 5.80020 5.85419 5.94313 6.04952 6.21678 6.33919 6.45327 6.45638 6.77404 7.42389 7.57101 7.86316 7.93861 8.34074 8.99370 9.58933 11.08644 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.060971 B = 0.010446 C = 0.009726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.125531 B = 2679.714357 C = 2878.243597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.241 3.759 3 C -0.167 4.167 4 O -0.393 6.393 5 C 0.020 3.980 6 C 0.060 3.940 7 H 0.070 0.930 8 C 0.028 3.972 9 C -0.514 4.514 10 H 0.058 0.942 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.895 3.105 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.273 1.273 17 O -0.356 6.356 18 H 0.071 0.929 19 H 0.067 0.933 20 H 0.065 0.935 21 H 0.065 0.935 22 H 0.061 0.939 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.035 0.965 27 H 0.030 0.970 28 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.746 7.162 6.821 10.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.164 3.836 3 C -0.225 4.225 4 O -0.315 6.315 5 C -0.056 4.056 6 C 0.003 3.997 7 H 0.088 0.912 8 C -0.009 4.009 9 C -0.552 4.552 10 H 0.076 0.924 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.723 3.277 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.198 1.198 17 O -0.277 6.277 18 H 0.090 0.910 19 H 0.086 0.914 20 H 0.084 0.916 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.090 0.910 24 H 0.108 0.892 25 H 0.091 0.909 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.873 7.052 6.733 10.491 hybrid contribution 0.488 0.165 -0.936 1.069 sum -3.385 7.217 5.797 9.856 Atomic orbital electron populations 1.22019 0.93264 1.03202 1.02276 1.23303 0.93474 0.90517 0.76327 1.22341 1.02217 0.95586 1.02351 1.88758 1.68976 1.43440 1.30291 1.24353 0.94871 0.89975 0.96408 1.24210 0.87131 0.96428 0.91962 0.91181 1.19170 0.97839 0.89859 0.94034 1.21117 1.43471 0.93080 0.97549 0.92391 1.25002 0.95740 0.94876 0.98849 1.69958 1.48908 1.00136 1.34661 0.86532 0.78944 0.78514 0.83689 1.20652 1.21187 1.19806 1.89340 1.42074 1.66073 1.30193 0.91037 0.91371 0.91637 0.91627 0.91985 0.90972 0.89163 0.90918 0.94650 0.95215 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.24 37.16 0.34 -1.92 15 2 C 0.24 4.31 1.47 -26.73 -0.04 4.27 15 3 C -0.17 -2.53 9.20 37.16 0.34 -2.19 15 4 O -0.39 -7.22 10.87 -59.05 -0.64 -7.87 15 5 C 0.02 0.37 7.54 38.16 0.29 0.66 15 6 C 0.06 1.29 3.37 -25.73 -0.09 1.21 15 7 H 0.07 1.49 8.14 -51.93 -0.42 1.07 15 8 C 0.03 0.72 4.75 -27.89 -0.13 0.59 15 9 C -0.51 -14.72 9.07 -34.44 -0.31 -15.03 15 10 H 0.06 1.65 7.74 -52.49 -0.41 1.24 15 11 C 0.06 1.62 5.46 -17.82 -0.10 1.53 15 12 N -0.90 -26.88 13.29 55.43 0.74 -26.14 15 13 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 15 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 16 H -0.27 -6.61 7.11 56.52 0.40 -6.21 15 17 O -0.36 -7.86 10.67 -59.05 -0.63 -8.49 15 18 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 19 H 0.07 0.87 8.14 -51.93 -0.42 0.44 15 20 H 0.06 1.02 8.14 -51.93 -0.42 0.59 15 21 H 0.06 0.85 8.14 -51.93 -0.42 0.42 15 22 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 23 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 24 H 0.09 1.44 8.14 -51.93 -0.42 1.02 15 25 H 0.07 1.32 8.04 -51.93 -0.42 0.91 15 26 H 0.04 0.93 8.14 -51.93 -0.42 0.50 15 27 H 0.03 0.83 8.14 -51.93 -0.42 0.40 15 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 LS Contribution 241.28 15.07 3.64 3.64 Total: -1.00 -30.73 241.28 -5.80 -36.53 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -4.19 Total: -3.66 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 0.30 Total: -10.88 kcal Atomic # 7 Polarization: -26.88 SS G_CDS: 0.74 Total: -26.14 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -1.27 Total: -16.35 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.73 -5.80 -36.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035566903.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.820 kcal (2) G-P(sol) polarization free energy of solvation -30.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds