Wall clock time and date at job start Mon Mar 30 2020 01:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 H 1.08994 * 109.51926 * 60.11348 * 9 7 2 11 11 C 1.53117 * 109.52180 * 180.29731 * 9 7 2 12 12 C 1.53174 * 109.35646 * 177.87385 * 11 9 7 13 13 H 1.09001 * 109.64260 * 180.16842 * 12 11 9 14 14 O 1.42895 * 109.55681 * 59.91204 * 12 11 9 15 15 C 1.53364 * 108.96709 * 300.06194 * 12 11 9 16 16 C 1.51286 * 108.38512 * 52.63339 * 15 12 11 17 17 O 1.20824 * 120.95471 * 130.61086 * 16 15 12 18 18 O 1.34934 * 118.08592 * 310.62557 * 16 15 12 19 19 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 20 20 H 1.08995 * 109.48901 * 297.84254 * 11 9 7 21 21 H 1.09007 * 109.48941 * 57.90705 * 11 9 7 22 22 H 0.96706 * 113.99948 * 180.51878 * 14 12 11 23 23 H 1.09002 * 109.68159 * 292.90888 * 15 12 11 24 24 H 1.09004 * 109.71009 * 172.37265 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 1 0.6220 -2.5565 -0.8941 11 6 2.2451 -3.6638 -0.0053 12 6 1.4762 -4.9875 0.0482 13 1 2.1797 -5.8201 0.0518 14 8 0.6201 -5.0898 -1.0914 15 6 0.6328 -5.0227 1.3287 16 6 -0.2013 -3.7619 1.3854 17 8 -1.3887 -3.8115 1.6034 18 8 0.4189 -2.5803 1.1854 19 1 -0.4850 -0.8400 0.0004 20 1 2.8465 -3.6290 -0.9136 21 1 2.8961 -3.5859 0.8655 22 1 0.0960 -5.9021 -1.1179 23 1 1.2880 -5.0690 2.1986 24 1 -0.0208 -5.8950 1.3145 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036436816.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:08 Heat of formation + Delta-G solvation = -148.121890 kcal Electronic energy + Delta-G solvation = -11839.762558 eV Core-core repulsion = 9524.831405 eV Total energy + Delta-G solvation = -2314.931153 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.69896 -37.01494 -35.89896 -32.89330 -31.82442 -29.31757 -25.39639 -22.62690 -21.84211 -19.30220 -17.62274 -16.64675 -16.12977 -15.41569 -14.70015 -14.57012 -13.79348 -13.76982 -13.21472 -12.35846 -11.97585 -11.62521 -11.12107 -10.93982 -10.77488 -10.66806 -10.15356 -10.14664 -9.63881 -9.01588 -8.54036 -8.50605 -6.53370 -4.37439 2.71040 3.38800 3.42118 3.57524 4.29647 4.41293 4.49412 4.89218 5.01193 5.15700 5.33765 5.54624 5.76045 5.88581 6.17591 6.24428 6.51899 7.02357 7.74780 7.80442 8.18839 8.31976 8.49414 8.68175 9.47065 10.86234 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.056982 B = 0.013940 C = 0.012340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.262991 B = 2008.195631 C = 2268.408256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.032 3.968 3 Si 1.077 2.923 4 H -0.284 1.284 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.607 4.607 8 H 0.067 0.933 9 C 0.212 3.788 10 H 0.042 0.958 11 C -0.136 4.136 12 C 0.103 3.897 13 H 0.062 0.938 14 O -0.559 6.559 15 C -0.204 4.204 16 C 0.481 3.519 17 O -0.495 6.495 18 O -0.371 6.371 19 H 0.284 0.716 20 H 0.082 0.918 21 H 0.081 0.919 22 H 0.373 0.627 23 H 0.106 0.894 24 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.992 -8.749 0.018 10.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.179 4.179 3 Si 0.904 3.096 4 H -0.211 1.211 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.643 4.643 8 H 0.085 0.915 9 C 0.162 3.838 10 H 0.060 0.940 11 C -0.173 4.173 12 C 0.044 3.956 13 H 0.080 0.920 14 O -0.364 6.364 15 C -0.243 4.243 16 C 0.323 3.677 17 O -0.381 6.381 18 O -0.291 6.291 19 H 0.096 0.904 20 H 0.100 0.900 21 H 0.100 0.900 22 H 0.219 0.781 23 H 0.124 0.876 24 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.489 -6.395 0.070 7.813 hybrid contribution 0.068 -2.579 0.284 2.596 sum 4.557 -8.974 0.354 10.071 Atomic orbital electron populations 1.70618 1.07068 1.32455 1.40159 1.26088 0.96465 1.03212 0.92160 0.83445 0.74630 0.74502 0.77046 1.21083 1.21132 1.20654 1.21991 0.94297 0.90254 1.57723 0.91520 1.20852 0.87207 0.94312 0.81418 0.94008 1.22222 0.99015 0.92660 1.03416 1.22030 0.90708 0.99476 0.83382 0.91996 1.86647 1.59360 1.45601 1.44775 1.23132 1.01284 0.98449 1.01471 1.23056 0.86415 0.86177 0.72094 1.90503 1.15872 1.87616 1.44072 1.87195 1.62367 1.32625 1.46961 0.90403 0.89951 0.90024 0.78074 0.87586 0.89087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.98 13.53 55.43 0.75 -26.23 14 2 C 0.03 0.91 5.40 -17.82 -0.10 0.82 14 3 Si 1.08 24.55 29.90 -169.99 -5.08 19.47 14 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 14 5 H -0.29 -6.05 7.11 56.52 0.40 -5.65 14 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 14 7 C -0.61 -16.77 8.81 -34.44 -0.30 -17.08 14 8 H 0.07 1.75 7.74 -52.49 -0.41 1.34 14 9 C 0.21 5.43 2.11 -27.82 -0.06 5.37 14 10 H 0.04 1.17 7.61 -51.93 -0.40 0.78 14 11 C -0.14 -2.66 5.05 -26.58 -0.13 -2.80 14 12 C 0.10 1.66 3.82 -26.45 -0.10 1.56 14 13 H 0.06 0.78 8.14 -51.93 -0.42 0.35 14 14 O -0.56 -9.45 12.48 -35.23 -0.44 -9.89 14 15 C -0.20 -3.37 5.93 -27.41 -0.16 -3.53 14 16 C 0.48 11.20 7.38 36.29 0.27 11.46 14 17 O -0.50 -12.77 17.95 -18.65 -0.33 -13.11 14 18 O -0.37 -9.98 8.96 -41.11 -0.37 -10.35 14 19 H 0.28 9.11 6.47 -40.82 -0.26 8.85 14 20 H 0.08 1.55 8.14 -51.93 -0.42 1.13 14 21 H 0.08 1.50 8.14 -51.92 -0.42 1.08 14 22 H 0.37 4.37 9.08 45.56 0.41 4.78 14 23 H 0.11 1.51 8.14 -51.93 -0.42 1.09 14 24 H 0.09 1.27 8.14 -51.93 -0.42 0.84 14 LS Contribution 214.26 15.07 3.23 3.23 Total: -1.00 -33.95 214.26 -4.40 -38.34 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -1.56 Total: 2.73 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -0.59 Total: -4.19 kcal Atomic # 7 Polarization: -26.98 SS G_CDS: 0.75 Total: -26.23 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -1.14 Total: -33.35 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.08 Total: 19.47 kcal Total LS contribution 3.23 Total: 3.23 kcal Total: -33.95 -4.40 -38.34 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036436816.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.779 kcal (2) G-P(sol) polarization free energy of solvation -33.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds