Wall clock time and date at job start Mon Mar 30 2020 01:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 H 1.08994 * 109.51926 * 60.11348 * 9 7 2 11 11 C 1.53117 * 109.52180 * 180.29731 * 9 7 2 12 12 C 1.53174 * 109.35646 * 177.87385 * 11 9 7 13 13 H 1.09001 * 109.64260 * 180.16842 * 12 11 9 14 14 O 1.42895 * 109.55681 * 59.91204 * 12 11 9 15 15 C 1.53364 * 108.96709 * 300.06194 * 12 11 9 16 16 C 1.51286 * 108.38512 * 52.63339 * 15 12 11 17 17 O 1.20824 * 120.95471 * 130.61086 * 16 15 12 18 18 O 1.34934 * 118.08592 * 310.62557 * 16 15 12 19 19 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 20 20 H 1.08995 * 109.48901 * 297.84254 * 11 9 7 21 21 H 1.09007 * 109.48941 * 57.90705 * 11 9 7 22 22 H 0.96706 * 113.99948 * 180.51878 * 14 12 11 23 23 H 1.09002 * 109.68159 * 292.90888 * 15 12 11 24 24 H 1.09004 * 109.71009 * 172.37265 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 1 0.6220 -2.5565 -0.8941 11 6 2.2451 -3.6638 -0.0053 12 6 1.4762 -4.9875 0.0482 13 1 2.1797 -5.8201 0.0518 14 8 0.6201 -5.0898 -1.0914 15 6 0.6328 -5.0227 1.3287 16 6 -0.2013 -3.7619 1.3854 17 8 -1.3887 -3.8115 1.6034 18 8 0.4189 -2.5803 1.1854 19 1 -0.4850 -0.8400 0.0004 20 1 2.8465 -3.6290 -0.9136 21 1 2.8961 -3.5859 0.8655 22 1 0.0960 -5.9021 -1.1179 23 1 1.2880 -5.0690 2.1986 24 1 -0.0208 -5.8950 1.3145 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036436816.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:08 Heat of formation + Delta-G solvation = -174.900285 kcal Electronic energy + Delta-G solvation = -11840.923757 eV Core-core repulsion = 9524.831405 eV Total energy + Delta-G solvation = -2316.092352 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.45534 -38.67337 -37.61637 -35.01361 -33.32302 -31.03722 -27.25440 -24.48051 -23.56988 -20.87573 -19.59476 -18.24965 -17.89246 -17.12190 -16.43260 -16.10794 -15.60702 -15.37891 -14.87580 -14.21648 -13.81123 -13.01771 -12.87536 -12.72880 -12.56809 -12.14720 -11.89422 -11.64579 -11.43257 -10.95663 -10.62747 -10.32631 -8.77742 -6.62696 0.88975 1.54097 1.63693 1.80802 2.51182 2.62153 3.09004 3.32568 3.57114 3.66967 3.82726 4.07746 4.41430 4.56527 4.61559 4.79604 4.93903 5.20365 5.70971 6.01264 6.31712 6.50424 6.63358 6.82338 7.33712 8.59007 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.056982 B = 0.013940 C = 0.012340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.262991 B = 2008.195631 C = 2268.408256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.025 4.025 3 Si 1.128 2.872 4 H -0.273 1.273 5 H -0.255 1.255 6 H -0.284 1.284 7 C -0.621 4.621 8 H 0.081 0.919 9 C 0.209 3.791 10 H 0.000 1.000 11 C -0.132 4.132 12 C 0.109 3.891 13 H 0.122 0.878 14 O -0.588 6.588 15 C -0.186 4.186 16 C 0.467 3.533 17 O -0.534 6.534 18 O -0.411 6.411 19 H 0.260 0.740 20 H 0.088 0.912 21 H 0.098 0.902 22 H 0.395 0.605 23 H 0.139 0.861 24 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.190 -10.365 0.326 12.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.227 4.227 3 Si 0.947 3.053 4 H -0.199 1.199 5 H -0.179 1.179 6 H -0.210 1.210 7 C -0.656 4.656 8 H 0.099 0.901 9 C 0.158 3.842 10 H 0.017 0.983 11 C -0.170 4.170 12 C 0.051 3.949 13 H 0.139 0.861 14 O -0.396 6.396 15 C -0.224 4.224 16 C 0.312 3.688 17 O -0.422 6.422 18 O -0.333 6.333 19 H 0.070 0.930 20 H 0.107 0.893 21 H 0.116 0.884 22 H 0.246 0.754 23 H 0.157 0.843 24 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.703 -8.061 0.375 10.491 hybrid contribution -0.658 -2.153 0.191 2.259 sum 6.045 -10.214 0.565 11.882 Atomic orbital electron populations 1.70786 1.08545 1.30858 1.44269 1.27781 0.96337 1.07735 0.90885 0.82850 0.74482 0.70117 0.77878 1.19894 1.17902 1.20987 1.22493 0.95235 0.91406 1.56513 0.90124 1.20712 0.87402 0.96544 0.79525 0.98264 1.22166 0.98026 0.92285 1.04504 1.22106 0.91118 0.99114 0.82578 0.86058 1.86609 1.60168 1.47666 1.45206 1.23185 1.01133 0.94905 1.03187 1.24308 0.86584 0.87497 0.70438 1.90468 1.17983 1.88154 1.45632 1.87020 1.63096 1.36079 1.47082 0.92978 0.89313 0.88365 0.75439 0.84314 0.85714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.88 13.53 21.45 0.29 -58.59 14 2 C -0.03 -1.45 5.40 84.65 0.46 -0.99 14 3 Si 1.13 49.34 29.90 68.60 2.05 51.39 14 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 14 5 H -0.26 -9.81 7.11 99.48 0.71 -9.11 14 6 H -0.28 -12.47 7.11 99.48 0.71 -11.77 14 7 C -0.62 -34.56 8.81 25.60 0.23 -34.33 14 8 H 0.08 4.14 7.74 -2.91 -0.02 4.12 14 9 C 0.21 10.81 2.11 29.89 0.06 10.88 14 10 H 0.00 -0.02 7.61 -2.39 -0.02 -0.04 14 11 C -0.13 -4.87 5.05 30.69 0.16 -4.72 14 12 C 0.11 3.05 3.82 30.77 0.12 3.17 14 13 H 0.12 2.16 8.14 -2.39 -0.02 2.15 14 14 O -0.59 -18.34 12.48 -148.98 -1.86 -20.20 14 15 C -0.19 -5.39 5.93 30.16 0.18 -5.21 14 16 C 0.47 21.62 7.38 71.42 0.53 22.15 14 17 O -0.53 -28.07 17.95 21.87 0.39 -27.67 14 18 O -0.41 -22.63 8.96 -58.52 -0.52 -23.15 14 19 H 0.26 17.74 6.47 -92.71 -0.60 17.14 14 20 H 0.09 3.13 8.14 -2.39 -0.02 3.11 14 21 H 0.10 3.27 8.14 -2.38 -0.02 3.25 14 22 H 0.40 7.96 9.08 -74.05 -0.67 7.29 14 23 H 0.14 3.21 8.14 -2.39 -0.02 3.19 14 24 H 0.12 2.84 8.14 -2.39 -0.02 2.82 14 Total: -1.00 -78.61 214.26 2.79 -75.83 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.71 Total: 11.47 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 1.72 Total: -9.06 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: 0.29 Total: -58.59 kcal Atomic # 8 Polarization: -69.04 SS G_CDS: -1.99 Total: -71.03 kcal Atomic # 14 Polarization: 49.34 SS G_CDS: 2.05 Total: 51.39 kcal Total: -78.61 2.79 -75.83 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036436816.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.075 kcal (2) G-P(sol) polarization free energy of solvation -78.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds