Wall clock time and date at job start Mon Mar 30 2020 01:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 H 1.08992 * 109.52432 * 59.87397 * 9 7 2 11 11 C 1.53123 * 109.51642 * 180.02562 * 9 7 2 12 12 C 1.53175 * 109.35486 * 177.87303 * 11 9 7 13 13 H 1.09007 * 109.55816 * 59.91296 * 12 11 9 14 14 O 1.42906 * 109.55406 * 180.11303 * 12 11 9 15 15 C 1.53357 * 108.96906 * 300.06289 * 12 11 9 16 16 C 1.51277 * 108.39008 * 52.62986 * 15 12 11 17 17 O 1.20827 * 120.96000 * 130.64933 * 16 15 12 18 18 O 1.34939 * 118.08772 * 310.63275 * 16 15 12 19 19 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.48474 * 297.83935 * 11 9 7 21 21 H 1.09002 * 109.48931 * 57.88548 * 11 9 7 22 22 H 0.96697 * 113.99776 * 180.02562 * 14 12 11 23 23 H 1.08997 * 109.68179 * 172.35868 * 15 12 11 24 24 H 1.09006 * 109.67942 * 292.90682 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8754 -0.6792 0.8890 11 6 4.0230 -2.6374 -0.0014 12 6 5.5538 -2.6334 -0.0544 13 1 5.9477 -2.1075 0.8154 14 8 6.0358 -3.9787 -0.0586 15 6 6.0064 -1.9198 -1.3341 16 6 5.3316 -0.5670 -1.3903 17 8 5.9683 0.4366 -1.6081 18 8 3.9982 -0.5134 -1.1906 19 1 -0.4850 0.8401 0.0004 20 1 3.6918 -3.1414 0.9066 21 1 3.6299 -3.1617 -0.8724 22 1 6.9995 -4.0511 -0.0909 23 1 7.0885 -1.7899 -1.3190 24 1 5.7192 -2.5097 -2.2046 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036436817.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:09 Heat of formation + Delta-G solvation = -162.209658 kcal Electronic energy + Delta-G solvation = -11738.952372 eV Core-core repulsion = 9423.410327 eV Total energy + Delta-G solvation = -2315.542045 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.46729 -38.65228 -37.70383 -34.94607 -33.38721 -31.48583 -27.80483 -24.04762 -23.44633 -20.82329 -19.32233 -18.50806 -17.83798 -17.55514 -16.62504 -16.26302 -15.79109 -15.27664 -14.68095 -14.12415 -14.04872 -13.20179 -13.07345 -12.87292 -12.48251 -12.41009 -11.99170 -11.57762 -11.22993 -11.02529 -10.93577 -10.45582 -8.49836 -6.65226 0.83719 1.30763 1.37630 1.63641 2.31157 2.46465 2.96633 3.19370 3.54163 3.71574 3.81869 4.09749 4.37343 4.55866 4.61722 4.78852 4.95960 5.22604 5.31416 6.04107 6.38523 6.47466 6.59565 6.89246 7.11984 8.62374 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.048289 B = 0.016465 C = 0.013002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.703923 B = 1700.210319 C = 2152.986883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.044 3.956 3 Si 0.921 3.079 4 H -0.266 1.266 5 H -0.228 1.228 6 H -0.287 1.287 7 C -0.531 4.531 8 H 0.063 0.937 9 C 0.198 3.802 10 H 0.049 0.951 11 C -0.130 4.130 12 C 0.118 3.882 13 H 0.078 0.922 14 O -0.565 6.565 15 C -0.186 4.186 16 C 0.472 3.528 17 O -0.518 6.518 18 O -0.401 6.401 19 H 0.274 0.726 20 H 0.091 0.909 21 H 0.070 0.930 22 H 0.400 0.600 23 H 0.128 0.872 24 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.728 -4.760 0.667 13.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.159 4.159 3 Si 0.745 3.255 4 H -0.192 1.192 5 H -0.151 1.151 6 H -0.214 1.214 7 C -0.567 4.567 8 H 0.081 0.919 9 C 0.146 3.854 10 H 0.067 0.933 11 C -0.167 4.167 12 C 0.059 3.941 13 H 0.095 0.905 14 O -0.373 6.373 15 C -0.225 4.225 16 C 0.316 3.684 17 O -0.405 6.405 18 O -0.322 6.322 19 H 0.084 0.916 20 H 0.110 0.890 21 H 0.089 0.911 22 H 0.251 0.749 23 H 0.146 0.854 24 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 12.100 -4.253 0.494 12.835 hybrid contribution 0.261 0.901 -0.188 0.957 sum 12.361 -3.351 0.306 12.811 Atomic orbital electron populations 1.69995 1.08083 1.29022 1.48208 1.25809 0.95328 1.03080 0.91717 0.86228 0.81462 0.78616 0.79177 1.19163 1.15123 1.21355 1.21137 0.89028 0.94323 1.52173 0.91908 1.20952 0.93606 0.89687 0.81107 0.93293 1.22027 0.93689 0.96511 1.04505 1.21722 0.93897 0.83509 0.95010 0.90462 1.86537 1.28903 1.24808 1.97098 1.23152 1.03481 0.92989 1.02828 1.23947 0.82217 0.91045 0.71155 1.90510 1.63886 1.41364 1.44766 1.87174 1.21643 1.75990 1.47417 0.91645 0.89020 0.91107 0.74938 0.85426 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.95 13.96 21.45 0.30 -54.65 14 2 C 0.04 2.51 5.47 84.66 0.46 2.97 14 3 Si 0.92 44.93 26.99 68.60 1.85 46.78 14 4 H -0.27 -12.24 7.11 99.48 0.71 -11.54 14 5 H -0.23 -11.40 5.28 99.48 0.53 -10.87 14 6 H -0.29 -13.98 7.11 99.48 0.71 -13.27 14 7 C -0.53 -28.91 9.39 25.60 0.24 -28.67 14 8 H 0.06 3.67 7.99 -2.91 -0.02 3.65 14 9 C 0.20 8.77 2.17 29.89 0.06 8.83 14 10 H 0.05 2.09 7.57 -2.39 -0.02 2.08 14 11 C -0.13 -4.59 4.96 30.69 0.15 -4.44 14 12 C 0.12 3.12 3.56 30.77 0.11 3.23 14 13 H 0.08 1.83 8.14 -2.38 -0.02 1.81 14 14 O -0.56 -12.53 13.33 -148.98 -1.99 -14.52 14 15 C -0.19 -4.93 5.88 30.15 0.18 -4.76 14 16 C 0.47 18.58 7.57 71.42 0.54 19.12 14 17 O -0.52 -23.05 17.95 21.86 0.39 -22.66 14 18 O -0.40 -18.63 7.09 -58.57 -0.42 -19.05 14 19 H 0.27 15.39 8.31 -92.70 -0.77 14.62 14 20 H 0.09 3.14 8.14 -2.39 -0.02 3.12 14 21 H 0.07 2.63 8.14 -2.39 -0.02 2.61 14 22 H 0.40 4.46 9.09 -74.06 -0.67 3.79 14 23 H 0.13 2.53 8.14 -2.39 -0.02 2.51 14 24 H 0.12 2.99 8.14 -2.38 -0.02 2.97 14 Total: -1.00 -68.57 211.47 2.25 -66.32 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: 0.36 Total: 1.48 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 1.75 Total: -3.71 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.30 Total: -54.65 kcal Atomic # 8 Polarization: -54.22 SS G_CDS: -2.01 Total: -56.22 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.85 Total: 46.78 kcal Total: -68.57 2.25 -66.32 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036436817.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.888 kcal (2) G-P(sol) polarization free energy of solvation -68.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds