Wall clock time and date at job start Mon Mar 30 2020 01:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30648 * 1 3 3 Si 1.86800 * 119.99721 * 2 1 4 4 H 1.48498 * 109.47141 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47195 * 300.00109 * 3 2 1 6 6 H 1.48495 * 109.47182 * 60.00059 * 3 2 1 7 7 C 1.40109 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.46211 * 120.00046 * 359.97438 * 7 2 1 10 10 O 1.21605 * 120.00033 * 359.97438 * 9 7 2 11 11 O 1.35007 * 119.99837 * 180.02562 * 9 7 2 12 12 C 1.42897 * 116.99535 * 179.97438 * 11 9 7 13 13 H 1.09002 * 109.87204 * 54.29779 * 12 11 9 14 14 C 1.54103 * 109.87577 * 175.30441 * 12 11 9 15 15 C 1.54808 * 104.18578 * 121.60091 * 14 12 11 16 16 C 1.54992 * 102.09663 * 20.88343 * 15 14 12 17 17 O 1.43750 * 109.87976 * 293.28792 * 12 11 9 18 18 H 0.96998 * 120.00257 * 0.02562 * 1 2 3 19 19 H 1.08992 * 110.48760 * 240.28080 * 14 12 11 20 20 H 1.09001 * 110.48539 * 2.79382 * 14 12 11 21 21 H 1.09007 * 110.90596 * 139.08267 * 15 14 12 22 22 H 1.09000 * 110.90905 * 262.67898 * 15 14 12 23 23 H 1.08994 * 110.61694 * 81.46994 * 16 15 14 24 24 H 1.09000 * 110.62133 * 204.47670 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.7004 1.3465 -0.0006 5 1 1.8816 2.3965 -1.2125 6 1 1.8816 2.3964 1.2125 7 6 2.0071 -1.2134 -0.0005 8 1 3.0871 -1.2133 -0.0010 9 6 1.2760 -2.4796 -0.0005 10 8 0.0600 -2.4797 0.0004 11 8 1.9512 -3.6488 -0.0005 12 6 1.1729 -4.8472 0.0000 13 1 0.4690 -4.8323 -0.8322 14 6 2.0988 -6.0733 -0.1187 15 6 1.7887 -6.9070 1.1483 16 6 0.3884 -6.3781 1.5505 17 8 0.4589 -4.9658 1.2420 18 1 -0.4850 0.8400 -0.0004 19 1 1.8637 -6.6432 -1.0175 20 1 3.1436 -5.7628 -0.1273 21 1 1.7501 -7.9709 0.9141 22 1 2.5193 -6.7091 1.9326 23 1 -0.3889 -6.8620 0.9593 24 1 0.2123 -6.5292 2.6155 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039089275.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:11 Heat of formation + Delta-G solvation = -145.270143 kcal Electronic energy + Delta-G solvation = -11482.771967 eV Core-core repulsion = 9167.964475 eV Total energy + Delta-G solvation = -2314.807492 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.19700 -37.20965 -34.25390 -32.52599 -31.69066 -28.16126 -26.41935 -22.53868 -21.12641 -20.27984 -17.39557 -16.16923 -15.91416 -15.27916 -15.11333 -14.11556 -13.64148 -13.30389 -12.82076 -12.09067 -11.58616 -11.42367 -11.19096 -11.09467 -10.95579 -10.59352 -10.39135 -10.18951 -9.54800 -9.09830 -8.86841 -7.97652 -6.38890 -4.83917 3.08765 3.16015 3.22884 3.96312 4.25455 4.44883 4.56431 4.86914 5.11646 5.27175 5.51299 5.59473 5.82664 5.89376 5.93581 6.09472 6.20179 6.33322 7.32050 7.42037 7.80413 8.19602 8.83320 8.85058 10.37081 10.58242 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.092132 B = 0.010131 C = 0.009583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 303.839957 B = 2763.068333 C = 2921.220469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.080 3.920 3 Si 0.925 3.075 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.508 4.508 8 H 0.081 0.919 9 C 0.482 3.518 10 O -0.548 6.548 11 O -0.376 6.376 12 C 0.251 3.749 13 H 0.065 0.935 14 C -0.146 4.146 15 C -0.154 4.154 16 C 0.047 3.953 17 O -0.375 6.375 18 H 0.273 0.727 19 H 0.080 0.920 20 H 0.089 0.911 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.058 0.942 24 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.750 -8.536 0.511 9.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.141 4.141 3 Si 0.749 3.251 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.541 4.541 8 H 0.099 0.901 9 C 0.340 3.660 10 O -0.441 6.441 11 O -0.298 6.298 12 C 0.156 3.844 13 H 0.082 0.918 14 C -0.183 4.183 15 C -0.191 4.191 16 C -0.030 4.030 17 O -0.295 6.295 18 H 0.084 0.916 19 H 0.098 0.902 20 H 0.108 0.892 21 H 0.096 0.904 22 H 0.096 0.904 23 H 0.076 0.924 24 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.109 -8.301 0.622 8.886 hybrid contribution 0.273 0.494 -0.122 0.577 sum 3.382 -7.807 0.500 8.522 Atomic orbital electron populations 1.70034 1.07243 1.27970 1.33655 1.25849 0.94888 1.00747 0.92590 0.86024 0.80430 0.80309 0.78387 1.18367 1.19863 1.19842 1.20458 0.94196 0.86397 1.53087 0.90065 1.21199 0.86829 0.81748 0.76187 1.90683 1.14655 1.86072 1.52702 1.86409 1.41614 1.14745 1.87058 1.23367 0.88711 0.85396 0.86895 0.91804 1.22914 1.02188 0.94977 0.98257 1.23113 0.98244 0.99664 0.98119 1.23494 0.95917 0.82573 1.01046 1.89148 1.76024 1.22792 1.41531 0.91601 0.90181 0.89208 0.90414 0.90394 0.92397 0.89333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.98 11.83 55.55 0.66 -22.33 14 2 C 0.08 2.26 5.50 -17.35 -0.10 2.16 14 3 Si 0.92 20.27 29.56 -169.99 -5.02 15.24 14 4 H -0.26 -5.50 7.11 56.52 0.40 -5.09 14 5 H -0.27 -5.78 7.11 56.52 0.40 -5.38 14 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 14 7 C -0.51 -15.21 9.67 -35.68 -0.34 -15.55 14 8 H 0.08 2.26 7.85 -52.48 -0.41 1.84 14 9 C 0.48 15.06 7.73 33.93 0.26 15.32 14 10 O -0.55 -18.64 14.38 -23.88 -0.34 -18.99 14 11 O -0.38 -10.19 9.98 -49.24 -0.49 -10.68 14 12 C 0.25 5.67 3.57 37.73 0.13 5.81 14 13 H 0.06 1.48 8.01 -51.93 -0.42 1.07 14 14 C -0.15 -2.33 6.81 -25.20 -0.17 -2.51 14 15 C -0.15 -2.08 7.15 -24.73 -0.18 -2.26 14 16 C 0.05 0.74 7.72 38.21 0.30 1.04 14 17 O -0.37 -8.78 10.84 -63.85 -0.69 -9.47 14 18 H 0.27 7.35 8.29 -40.82 -0.34 7.01 14 19 H 0.08 1.06 8.14 -51.93 -0.42 0.63 14 20 H 0.09 1.43 7.97 -51.93 -0.41 1.02 14 21 H 0.08 0.79 8.14 -51.92 -0.42 0.37 14 22 H 0.08 1.04 8.14 -51.93 -0.42 0.61 14 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 14 24 H 0.09 1.22 8.14 -51.93 -0.42 0.80 14 LS Contribution 218.90 15.07 3.30 3.30 Total: -1.00 -35.87 218.90 -5.18 -41.05 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: -2.49 Total: -2.14 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -0.10 Total: 4.02 kcal Atomic # 7 Polarization: -22.98 SS G_CDS: 0.66 Total: -22.33 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -1.53 Total: -39.14 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -35.87 -5.18 -41.05 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039089275.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.221 kcal (2) G-P(sol) polarization free energy of solvation -35.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds