Wall clock time and date at job start Mon Mar 30 2020 01:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30648 * 1 3 3 Si 1.86800 * 119.99721 * 2 1 4 4 H 1.48498 * 109.47141 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47195 * 300.00109 * 3 2 1 6 6 H 1.48495 * 109.47182 * 60.00059 * 3 2 1 7 7 C 1.40109 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.46211 * 120.00046 * 359.97438 * 7 2 1 10 10 O 1.21605 * 120.00033 * 359.97438 * 9 7 2 11 11 O 1.35007 * 119.99837 * 180.02562 * 9 7 2 12 12 C 1.42897 * 116.99535 * 179.97438 * 11 9 7 13 13 H 1.09002 * 109.87204 * 54.29779 * 12 11 9 14 14 C 1.54103 * 109.87577 * 175.30441 * 12 11 9 15 15 C 1.54808 * 104.18578 * 121.60091 * 14 12 11 16 16 C 1.54992 * 102.09663 * 20.88343 * 15 14 12 17 17 O 1.43750 * 109.87976 * 293.28792 * 12 11 9 18 18 H 0.96998 * 120.00257 * 0.02562 * 1 2 3 19 19 H 1.08992 * 110.48760 * 240.28080 * 14 12 11 20 20 H 1.09001 * 110.48539 * 2.79382 * 14 12 11 21 21 H 1.09007 * 110.90596 * 139.08267 * 15 14 12 22 22 H 1.09000 * 110.90905 * 262.67898 * 15 14 12 23 23 H 1.08994 * 110.61694 * 81.46994 * 16 15 14 24 24 H 1.09000 * 110.62133 * 204.47670 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.7004 1.3465 -0.0006 5 1 1.8816 2.3965 -1.2125 6 1 1.8816 2.3964 1.2125 7 6 2.0071 -1.2134 -0.0005 8 1 3.0871 -1.2133 -0.0010 9 6 1.2760 -2.4796 -0.0005 10 8 0.0600 -2.4797 0.0004 11 8 1.9512 -3.6488 -0.0005 12 6 1.1729 -4.8472 0.0000 13 1 0.4690 -4.8323 -0.8322 14 6 2.0988 -6.0733 -0.1187 15 6 1.7887 -6.9070 1.1483 16 6 0.3884 -6.3781 1.5505 17 8 0.4589 -4.9658 1.2420 18 1 -0.4850 0.8400 -0.0004 19 1 1.8637 -6.6432 -1.0175 20 1 3.1436 -5.7628 -0.1273 21 1 1.7501 -7.9709 0.9141 22 1 2.5193 -6.7091 1.9326 23 1 -0.3889 -6.8620 0.9593 24 1 0.2123 -6.5292 2.6155 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039089275.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:11 Heat of formation + Delta-G solvation = -171.381650 kcal Electronic energy + Delta-G solvation = -11483.904247 eV Core-core repulsion = 9167.964475 eV Total energy + Delta-G solvation = -2315.939772 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.97812 -39.19426 -36.43803 -34.78659 -33.09705 -29.85100 -28.48628 -24.19420 -22.68587 -22.10189 -19.48078 -18.27028 -17.66303 -17.04554 -16.83549 -15.85656 -15.44131 -14.92602 -14.56968 -14.06021 -13.42019 -12.94125 -12.80016 -12.73644 -12.52019 -12.36607 -11.98531 -11.76270 -11.49572 -11.04480 -10.78582 -10.35185 -8.54809 -7.17844 1.36840 1.37474 1.59631 2.13265 2.16600 2.65562 2.99680 3.30574 3.56608 3.74947 3.99059 4.26366 4.43616 4.66168 4.74758 4.83735 4.95317 5.12950 5.14201 5.61701 5.93421 6.00214 6.56422 6.61646 8.08805 8.43201 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.092132 B = 0.010131 C = 0.009583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 303.839957 B = 2763.068333 C = 2921.220469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.023 3.977 3 Si 1.021 2.979 4 H -0.245 1.245 5 H -0.258 1.258 6 H -0.261 1.261 7 C -0.540 4.540 8 H 0.096 0.904 9 C 0.461 3.539 10 O -0.594 6.594 11 O -0.383 6.383 12 C 0.234 3.766 13 H 0.043 0.957 14 C -0.134 4.134 15 C -0.138 4.138 16 C 0.033 3.967 17 O -0.426 6.426 18 H 0.286 0.714 19 H 0.113 0.887 20 H 0.091 0.909 21 H 0.124 0.876 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.338 -8.774 0.627 10.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.193 4.193 3 Si 0.838 3.162 4 H -0.168 1.168 5 H -0.182 1.182 6 H -0.185 1.185 7 C -0.572 4.572 8 H 0.114 0.886 9 C 0.322 3.678 10 O -0.491 6.491 11 O -0.304 6.304 12 C 0.140 3.860 13 H 0.060 0.940 14 C -0.172 4.172 15 C -0.175 4.175 16 C -0.043 4.043 17 O -0.348 6.348 18 H 0.096 0.904 19 H 0.132 0.868 20 H 0.110 0.890 21 H 0.143 0.857 22 H 0.098 0.902 23 H 0.094 0.906 24 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.713 -8.597 0.742 9.832 hybrid contribution -0.293 0.446 -0.137 0.551 sum 4.420 -8.151 0.605 9.292 Atomic orbital electron populations 1.70157 1.09812 1.30241 1.33613 1.27316 0.95898 1.05353 0.90730 0.84642 0.79033 0.73298 0.79272 1.16773 1.18217 1.18504 1.21082 0.95230 0.87109 1.53810 0.88579 1.21711 0.86654 0.83417 0.75984 1.90623 1.16332 1.87141 1.55004 1.86332 1.41960 1.15356 1.86755 1.23880 0.89922 0.85807 0.86411 0.93980 1.22971 1.00535 0.92372 1.01298 1.23126 0.96195 1.01646 0.96568 1.23941 0.98342 0.79292 1.02705 1.89080 1.76598 1.27635 1.41478 0.90420 0.86837 0.89040 0.85730 0.90153 0.90611 0.87489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -49.98 11.83 21.85 0.26 -49.73 14 2 C 0.02 1.31 5.50 85.32 0.47 1.78 14 3 Si 1.02 40.89 29.56 68.60 2.03 42.92 14 4 H -0.24 -9.12 7.11 99.48 0.71 -8.42 14 5 H -0.26 -9.64 7.11 99.48 0.71 -8.93 14 6 H -0.26 -9.86 7.11 99.48 0.71 -9.15 14 7 C -0.54 -32.99 9.67 24.80 0.24 -32.75 14 8 H 0.10 5.36 7.85 -2.91 -0.02 5.34 14 9 C 0.46 30.06 7.73 69.89 0.54 30.60 14 10 O -0.59 -42.49 14.38 23.83 0.34 -42.15 14 11 O -0.38 -21.46 9.98 -51.70 -0.52 -21.98 14 12 C 0.23 10.83 3.57 72.36 0.26 11.09 14 13 H 0.04 2.07 8.01 -2.39 -0.02 2.05 14 14 C -0.13 -4.05 6.81 31.58 0.21 -3.83 14 15 C -0.14 -3.28 7.15 31.89 0.23 -3.05 14 16 C 0.03 0.99 7.72 72.66 0.56 1.55 14 17 O -0.43 -20.49 10.84 -121.61 -1.32 -21.81 14 18 H 0.29 15.54 8.29 -92.71 -0.77 14.78 14 19 H 0.11 2.65 8.14 -2.39 -0.02 2.63 14 20 H 0.09 2.74 7.97 -2.39 -0.02 2.72 14 21 H 0.12 1.87 8.14 -2.38 -0.02 1.85 14 22 H 0.08 1.89 8.14 -2.39 -0.02 1.87 14 23 H 0.08 2.00 8.14 -2.39 -0.02 1.98 14 24 H 0.11 2.78 8.14 -2.39 -0.02 2.76 14 Total: -1.00 -82.40 218.90 4.50 -77.90 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 1.19 Total: 9.47 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 2.51 Total: 5.38 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.26 Total: -49.73 kcal Atomic # 8 Polarization: -84.45 SS G_CDS: -1.49 Total: -85.94 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -82.40 4.50 -77.90 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039089275.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.483 kcal (2) G-P(sol) polarization free energy of solvation -82.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds