Wall clock time and date at job start Mon Mar 30 2020 01:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30651 * 1 3 3 Si 1.86802 * 119.99868 * 2 1 4 4 H 1.48500 * 109.46949 * 274.98123 * 3 2 1 5 5 H 1.48498 * 109.47194 * 34.97984 * 3 2 1 6 6 H 1.48493 * 109.47320 * 154.98058 * 3 2 1 7 7 C 1.40112 * 120.00373 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00304 * 186.15549 * 7 2 1 9 9 C 1.46215 * 119.99744 * 6.15196 * 7 2 1 10 10 O 1.21600 * 120.00168 * 353.94801 * 9 7 2 11 11 O 1.34996 * 119.99613 * 174.21362 * 9 7 2 12 12 C 1.42908 * 116.99737 * 179.72559 * 11 9 7 13 13 H 1.08996 * 110.33046 * 310.70818 * 12 11 9 14 14 C 1.54483 * 110.37004 * 188.45304 * 12 11 9 15 15 C 1.54508 * 104.06122 * 217.18995 * 14 12 11 16 16 C 1.54480 * 104.06372 * 0.02562 * 15 14 12 17 17 O 1.44426 * 110.36619 * 72.95822 * 12 11 9 18 18 H 0.96998 * 119.99887 * 0.02562 * 1 2 3 19 19 H 1.08993 * 110.51199 * 335.84019 * 14 12 11 20 20 H 1.09000 * 110.50644 * 98.41244 * 14 12 11 21 21 H 1.09001 * 110.50976 * 118.64401 * 15 14 12 22 22 H 1.08995 * 110.51030 * 241.36000 * 15 14 12 23 23 H 1.08993 * 110.37324 * 142.81117 * 16 15 14 24 24 H 1.09008 * 110.36939 * 265.03730 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 2.3827 2.1072 -1.3948 5 1 1.4945 2.6200 0.8026 6 1 3.5867 1.4122 0.5921 7 6 2.0071 -1.2134 0.0005 8 1 3.0825 -1.2160 0.1008 9 6 1.2824 -2.4760 -0.1346 10 8 0.0664 -2.4820 -0.1367 11 8 1.9633 -3.6358 -0.2516 12 6 1.1910 -4.8320 -0.3739 13 1 0.4246 -4.8688 0.4002 14 6 2.1054 -6.0739 -0.2850 15 6 1.4899 -7.0665 -1.2966 16 6 0.2769 -6.3066 -1.8775 17 8 0.5869 -4.9085 -1.6836 18 1 -0.4850 0.8400 -0.0004 19 1 3.1253 -5.8187 -0.5725 20 1 2.0864 -6.4908 0.7220 21 1 2.2056 -7.3019 -2.0844 22 1 1.1649 -7.9754 -0.7904 23 1 0.1637 -6.5273 -2.9389 24 1 -0.6315 -6.5717 -1.3365 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039089276.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:12 Heat of formation + Delta-G solvation = -171.048637 kcal Electronic energy + Delta-G solvation = -11454.716201 eV Core-core repulsion = 9138.790869 eV Total energy + Delta-G solvation = -2315.925332 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.97526 -39.26922 -36.48858 -34.81088 -33.09941 -29.85116 -28.50103 -24.30222 -22.60718 -22.10502 -19.47956 -18.29255 -17.72203 -17.13391 -16.76625 -15.92444 -15.45779 -14.96280 -14.65572 -13.97448 -13.42120 -12.97296 -12.84661 -12.74579 -12.59677 -12.41072 -12.00347 -11.63585 -11.51911 -11.04818 -10.82096 -10.40266 -8.57341 -7.19252 1.37172 1.37618 1.58412 2.11195 2.14713 2.55785 3.03649 3.28831 3.57771 3.79298 3.99584 4.21174 4.37107 4.62972 4.76039 4.84127 4.97477 5.12173 5.13146 5.55320 5.86661 5.99824 6.52193 6.59767 8.04642 8.41040 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.095041 B = 0.009960 C = 0.009440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 294.538917 B = 2810.638587 C = 2965.437440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.024 3.976 3 Si 1.022 2.978 4 H -0.258 1.258 5 H -0.261 1.261 6 H -0.244 1.244 7 C -0.540 4.540 8 H 0.098 0.902 9 C 0.461 3.539 10 O -0.596 6.596 11 O -0.377 6.377 12 C 0.233 3.767 13 H 0.046 0.954 14 C -0.133 4.133 15 C -0.137 4.137 16 C 0.033 3.967 17 O -0.428 6.428 18 H 0.286 0.714 19 H 0.086 0.914 20 H 0.108 0.892 21 H 0.095 0.905 22 H 0.114 0.886 23 H 0.111 0.889 24 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.801 -8.638 -0.999 9.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.193 4.193 3 Si 0.838 3.162 4 H -0.182 1.182 5 H -0.185 1.185 6 H -0.167 1.167 7 C -0.572 4.572 8 H 0.116 0.884 9 C 0.322 3.678 10 O -0.494 6.494 11 O -0.298 6.298 12 C 0.138 3.862 13 H 0.064 0.936 14 C -0.171 4.171 15 C -0.174 4.174 16 C -0.043 4.043 17 O -0.350 6.350 18 H 0.097 0.903 19 H 0.105 0.895 20 H 0.126 0.874 21 H 0.113 0.887 22 H 0.133 0.867 23 H 0.129 0.871 24 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.223 -8.459 -1.135 9.522 hybrid contribution -0.323 0.435 0.110 0.552 sum 3.900 -8.024 -1.025 8.981 Atomic orbital electron populations 1.70147 1.09838 1.30388 1.33312 1.27325 0.95890 1.05358 0.90688 0.84671 0.78750 0.73042 0.79765 1.18210 1.18501 1.16706 1.21056 0.95780 0.87216 1.53109 0.88437 1.21757 0.86581 0.83385 0.76086 1.90616 1.16360 1.86601 1.55791 1.86321 1.41670 1.16118 1.85645 1.24084 0.91237 0.85674 0.85164 0.93632 1.22914 0.99879 0.91592 1.02670 1.22928 0.97119 0.98517 0.98868 1.23686 0.98319 0.78982 1.03298 1.89201 1.81112 1.28612 1.36036 0.90341 0.89509 0.87388 0.88654 0.86747 0.87100 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -49.65 11.85 21.85 0.26 -49.39 14 2 C 0.02 1.34 5.50 85.32 0.47 1.81 14 3 Si 1.02 40.70 29.56 68.60 2.03 42.73 14 4 H -0.26 -9.76 7.11 99.48 0.71 -9.06 14 5 H -0.26 -9.67 7.11 99.48 0.71 -8.96 14 6 H -0.24 -9.01 7.11 99.48 0.71 -8.30 14 7 C -0.54 -32.81 9.66 24.80 0.24 -32.58 14 8 H 0.10 5.41 7.86 -2.91 -0.02 5.38 14 9 C 0.46 29.90 7.79 69.89 0.54 30.44 14 10 O -0.60 -42.41 14.56 21.13 0.31 -42.10 14 11 O -0.38 -21.16 10.08 -51.62 -0.52 -21.68 14 12 C 0.23 10.80 3.37 72.49 0.24 11.04 14 13 H 0.05 2.24 7.86 -2.39 -0.02 2.22 14 14 C -0.13 -4.08 6.83 31.61 0.22 -3.86 14 15 C -0.14 -3.16 7.09 31.61 0.22 -2.94 14 16 C 0.03 1.01 7.63 72.49 0.55 1.56 14 17 O -0.43 -20.38 11.36 -124.63 -1.42 -21.80 14 18 H 0.29 15.52 8.29 -92.71 -0.77 14.75 14 19 H 0.09 2.66 8.09 -2.39 -0.02 2.64 14 20 H 0.11 2.69 8.14 -2.39 -0.02 2.67 14 21 H 0.09 1.87 8.14 -2.39 -0.02 1.85 14 22 H 0.11 1.81 8.14 -2.39 -0.02 1.79 14 23 H 0.11 2.81 8.14 -2.39 -0.02 2.79 14 24 H 0.07 1.85 8.14 -2.38 -0.02 1.83 14 Total: -1.00 -81.50 219.41 4.34 -77.16 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 1.19 Total: 9.61 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 2.49 Total: 5.48 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 0.26 Total: -49.39 kcal Atomic # 8 Polarization: -83.96 SS G_CDS: -1.63 Total: -85.59 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -81.50 4.34 -77.16 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039089276.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.893 kcal (2) G-P(sol) polarization free energy of solvation -81.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds