Wall clock time and date at job start Mon Mar 30 2020 01:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86799 * 120.00102 * 2 1 4 4 H 1.48501 * 109.46971 * 239.99061 * 3 2 1 5 5 H 1.48499 * 109.47370 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47190 * 119.99865 * 3 2 1 7 7 C 1.40113 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00226 * 180.02562 * 7 2 1 9 9 C 1.46219 * 119.99874 * 359.97438 * 7 2 1 10 10 O 1.21608 * 120.00252 * 0.02562 * 9 7 2 11 11 O 1.35001 * 119.99907 * 179.97438 * 9 7 2 12 12 C 1.42902 * 116.99788 * 180.02562 * 11 9 7 13 13 H 1.09002 * 110.74890 * 327.98621 * 12 11 9 14 14 C 1.55566 * 110.83807 * 204.31146 * 12 11 9 15 15 C 1.54944 * 100.82489 * 207.68718 * 14 12 11 16 16 O 1.43645 * 105.22260 * 36.43849 * 15 14 12 17 17 C 1.43235 * 109.97529 * 335.52671 * 16 15 14 18 18 H 0.97007 * 119.99880 * 0.02562 * 1 2 3 19 19 H 1.08997 * 111.22347 * 89.78156 * 14 12 11 20 20 H 1.09003 * 111.13190 * 325.54753 * 14 12 11 21 21 H 1.09002 * 110.30953 * 277.47426 * 15 14 12 22 22 H 1.09000 * 110.30834 * 155.40499 * 15 14 12 23 23 H 1.08995 * 109.83514 * 121.22466 * 17 16 15 24 24 H 1.09003 * 109.82666 * 242.20160 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0944 1.6962 -1.2124 5 1 1.2755 2.7465 -0.0006 6 1 3.0942 1.6964 1.2126 7 6 2.0070 -1.2134 0.0005 8 1 3.0869 -1.2135 0.0010 9 6 1.2758 -2.4797 0.0017 10 8 0.0598 -2.4797 0.0017 11 8 1.9508 -3.6488 0.0017 12 6 1.1725 -4.8473 0.0022 13 1 0.2375 -4.7002 0.5429 14 6 1.9825 -6.0329 0.6008 15 6 1.3254 -7.2318 -0.1285 16 8 1.0341 -6.7546 -1.4517 17 6 0.9035 -5.3283 -1.4399 18 1 -0.4850 0.8401 -0.0004 19 1 1.8405 -6.1033 1.6792 20 1 3.0402 -5.9524 0.3501 21 1 0.4063 -7.5255 0.3786 22 1 2.0174 -8.0727 -0.1733 23 1 1.6310 -4.8846 -2.1194 24 1 -0.1055 -5.0469 -1.7413 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039089295.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:16 Heat of formation + Delta-G solvation = -144.087281 kcal Electronic energy + Delta-G solvation = -11400.907213 eV Core-core repulsion = 9086.151013 eV Total energy + Delta-G solvation = -2314.756200 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.31605 -37.59965 -34.57374 -32.65599 -30.95538 -28.52441 -26.61732 -22.46762 -21.60432 -19.98553 -17.47589 -16.33589 -16.09641 -15.55078 -14.66914 -14.36311 -13.79663 -13.49718 -12.90815 -12.18309 -12.07794 -11.38350 -11.34938 -11.18733 -10.96136 -10.66924 -10.39608 -10.11476 -9.28201 -9.19847 -8.93071 -8.17691 -6.50525 -4.96294 3.05876 3.09925 3.13095 3.86552 4.11407 4.22159 4.57456 4.89363 5.22261 5.36073 5.49833 5.58091 5.78854 5.85480 6.05796 6.15840 6.33891 6.43475 7.21718 7.24051 7.70408 8.09082 8.68791 8.73553 10.22346 10.45194 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.097548 B = 0.009501 C = 0.009195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 286.969342 B = 2946.503840 C = 3044.447516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.080 3.920 3 Si 0.926 3.074 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.506 4.506 8 H 0.082 0.918 9 C 0.477 3.523 10 O -0.560 6.560 11 O -0.371 6.371 12 C 0.064 3.936 13 H 0.085 0.915 14 C -0.153 4.153 15 C 0.053 3.947 16 O -0.387 6.387 17 C 0.035 3.965 18 H 0.276 0.724 19 H 0.084 0.916 20 H 0.086 0.914 21 H 0.059 0.941 22 H 0.084 0.916 23 H 0.077 0.923 24 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.440 -6.254 0.747 7.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.141 4.141 3 Si 0.750 3.250 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.539 4.539 8 H 0.100 0.900 9 C 0.336 3.664 10 O -0.455 6.455 11 O -0.291 6.291 12 C 0.007 3.993 13 H 0.103 0.897 14 C -0.191 4.191 15 C -0.024 4.024 16 O -0.306 6.306 17 C -0.042 4.042 18 H 0.087 0.913 19 H 0.103 0.897 20 H 0.105 0.895 21 H 0.077 0.923 22 H 0.102 0.898 23 H 0.095 0.905 24 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.860 -6.323 0.564 6.962 hybrid contribution 0.201 0.867 0.206 0.914 sum 3.061 -5.456 0.770 6.303 Atomic orbital electron populations 1.70000 1.07281 1.28399 1.33091 1.25859 0.94919 1.00831 0.92482 0.86110 0.79594 0.79411 0.79909 1.18823 1.20222 1.18843 1.20396 0.94267 0.86337 1.52926 0.89998 1.21298 0.86760 0.82074 0.76247 1.90661 1.14822 1.86053 1.53970 1.86352 1.41261 1.14140 1.87380 1.23301 0.95913 0.85254 0.94869 0.89674 1.23346 1.01375 0.93523 1.00807 1.23273 0.98965 0.96551 0.83564 1.88357 1.92645 1.21240 1.28406 1.23610 1.02030 0.80190 0.98330 0.91348 0.89719 0.89505 0.92289 0.89775 0.90524 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.04 11.83 55.55 0.66 -21.38 14 2 C 0.08 2.18 5.50 -17.35 -0.10 2.08 14 3 Si 0.93 19.56 29.56 -169.99 -5.02 14.54 14 4 H -0.26 -5.41 7.11 56.52 0.40 -5.01 14 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 14 6 H -0.26 -5.40 7.11 56.52 0.40 -5.00 14 7 C -0.51 -14.48 9.67 -35.68 -0.34 -14.83 14 8 H 0.08 2.17 7.85 -52.49 -0.41 1.76 14 9 C 0.48 14.00 7.88 33.94 0.27 14.27 14 10 O -0.56 -17.83 14.33 -19.34 -0.28 -18.11 14 11 O -0.37 -9.41 9.87 -41.33 -0.41 -9.82 14 12 C 0.06 1.36 3.22 -24.64 -0.08 1.28 14 13 H 0.09 1.92 7.27 -51.93 -0.38 1.54 14 14 C -0.15 -2.46 6.91 -24.34 -0.17 -2.62 14 15 C 0.05 0.76 7.77 38.18 0.30 1.06 14 16 O -0.39 -7.00 11.36 -35.23 -0.40 -7.40 14 17 C 0.04 0.70 7.58 37.88 0.29 0.99 14 18 H 0.28 7.17 8.29 -40.82 -0.34 6.83 14 19 H 0.08 1.20 8.14 -51.93 -0.42 0.77 14 20 H 0.09 1.37 8.14 -51.93 -0.42 0.94 14 21 H 0.06 0.77 8.14 -51.93 -0.42 0.35 14 22 H 0.08 0.99 8.14 -51.93 -0.42 0.56 14 23 H 0.08 1.55 8.05 -51.93 -0.42 1.14 14 24 H 0.07 1.48 8.14 -51.93 -0.42 1.06 14 LS Contribution 218.95 15.07 3.30 3.30 Total: -1.00 -32.49 218.95 -4.45 -36.94 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -2.45 Total: -0.30 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 0.16 Total: 2.23 kcal Atomic # 7 Polarization: -22.04 SS G_CDS: 0.66 Total: -21.38 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -1.08 Total: -35.33 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -32.49 -4.45 -36.94 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039089295.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.149 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds