Wall clock time and date at job start Mon Mar 30 2020 01:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86799 * 120.00102 * 2 1 4 4 H 1.48501 * 109.46971 * 239.99061 * 3 2 1 5 5 H 1.48499 * 109.47370 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47190 * 119.99865 * 3 2 1 7 7 C 1.40113 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00226 * 180.02562 * 7 2 1 9 9 C 1.46219 * 119.99874 * 359.97438 * 7 2 1 10 10 O 1.21608 * 120.00252 * 0.02562 * 9 7 2 11 11 O 1.35001 * 119.99907 * 179.97438 * 9 7 2 12 12 C 1.42902 * 116.99788 * 180.02562 * 11 9 7 13 13 H 1.09002 * 110.74890 * 327.98621 * 12 11 9 14 14 C 1.55566 * 110.83807 * 204.31146 * 12 11 9 15 15 C 1.54944 * 100.82489 * 207.68718 * 14 12 11 16 16 O 1.43645 * 105.22260 * 36.43849 * 15 14 12 17 17 C 1.43235 * 109.97529 * 335.52671 * 16 15 14 18 18 H 0.97007 * 119.99880 * 0.02562 * 1 2 3 19 19 H 1.08997 * 111.22347 * 89.78156 * 14 12 11 20 20 H 1.09003 * 111.13190 * 325.54753 * 14 12 11 21 21 H 1.09002 * 110.30953 * 277.47426 * 15 14 12 22 22 H 1.09000 * 110.30834 * 155.40499 * 15 14 12 23 23 H 1.08995 * 109.83514 * 121.22466 * 17 16 15 24 24 H 1.09003 * 109.82666 * 242.20160 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0944 1.6962 -1.2124 5 1 1.2755 2.7465 -0.0006 6 1 3.0942 1.6964 1.2126 7 6 2.0070 -1.2134 0.0005 8 1 3.0869 -1.2135 0.0010 9 6 1.2758 -2.4797 0.0017 10 8 0.0598 -2.4797 0.0017 11 8 1.9508 -3.6488 0.0017 12 6 1.1725 -4.8473 0.0022 13 1 0.2375 -4.7002 0.5429 14 6 1.9825 -6.0329 0.6008 15 6 1.3254 -7.2318 -0.1285 16 8 1.0341 -6.7546 -1.4517 17 6 0.9035 -5.3283 -1.4399 18 1 -0.4850 0.8401 -0.0004 19 1 1.8405 -6.1033 1.6792 20 1 3.0402 -5.9524 0.3501 21 1 0.4063 -7.5255 0.3786 22 1 2.0174 -8.0727 -0.1733 23 1 1.6310 -4.8846 -2.1194 24 1 -0.1055 -5.0469 -1.7413 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039089295.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:15 Heat of formation + Delta-G solvation = -167.296885 kcal Electronic energy + Delta-G solvation = -11401.913657 eV Core-core repulsion = 9086.151013 eV Total energy + Delta-G solvation = -2315.762644 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.02880 -39.44932 -36.65036 -34.81283 -32.45566 -30.07579 -28.73022 -24.17165 -23.12227 -21.84216 -19.48819 -18.28090 -17.63466 -17.38889 -16.39203 -16.02406 -15.70931 -15.26971 -14.36241 -13.95125 -13.69789 -13.24473 -13.11035 -12.76223 -12.65940 -12.47213 -12.05928 -11.75407 -11.16316 -10.98915 -10.63889 -10.43583 -8.57175 -7.19504 1.38033 1.39363 1.55973 2.11804 2.13305 2.52145 2.95711 3.21716 3.49106 3.81005 3.94726 4.14783 4.27866 4.60497 4.60902 4.76338 4.88140 4.99300 5.13128 5.64540 5.83309 5.99030 6.51917 6.59943 8.04454 8.39993 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.097548 B = 0.009501 C = 0.009195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 286.969342 B = 2946.503840 C = 3044.447516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.026 3.974 3 Si 1.017 2.983 4 H -0.251 1.251 5 H -0.265 1.265 6 H -0.250 1.250 7 C -0.538 4.538 8 H 0.096 0.904 9 C 0.460 3.540 10 O -0.600 6.600 11 O -0.373 6.373 12 C 0.046 3.954 13 H 0.064 0.936 14 C -0.140 4.140 15 C 0.051 3.949 16 O -0.394 6.394 17 C 0.045 3.955 18 H 0.286 0.714 19 H 0.106 0.894 20 H 0.093 0.907 21 H 0.076 0.924 22 H 0.123 0.877 23 H 0.069 0.931 24 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.938 -6.157 1.097 7.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.190 4.190 3 Si 0.834 3.166 4 H -0.175 1.175 5 H -0.189 1.189 6 H -0.173 1.173 7 C -0.570 4.570 8 H 0.115 0.885 9 C 0.321 3.679 10 O -0.499 6.499 11 O -0.293 6.293 12 C -0.011 4.011 13 H 0.082 0.918 14 C -0.178 4.178 15 C -0.025 4.025 16 O -0.314 6.314 17 C -0.032 4.032 18 H 0.097 0.903 19 H 0.125 0.875 20 H 0.112 0.888 21 H 0.094 0.906 22 H 0.141 0.859 23 H 0.087 0.913 24 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.374 -6.276 0.919 7.704 hybrid contribution -0.293 0.712 0.113 0.778 sum 4.081 -5.564 1.032 6.977 Atomic orbital electron populations 1.70118 1.09675 1.30445 1.33268 1.27235 0.95860 1.05191 0.90743 0.84787 0.78105 0.72984 0.80772 1.17463 1.18910 1.17342 1.21009 0.95314 0.87084 1.53581 0.88548 1.21716 0.86572 0.83517 0.76072 1.90615 1.16302 1.86989 1.55945 1.86282 1.41352 1.14578 1.87090 1.23690 0.95987 0.85218 0.96203 0.91832 1.23390 1.00986 0.91250 1.02145 1.23609 1.00643 0.96594 0.81609 1.88346 1.92814 1.19509 1.30687 1.23338 1.00990 0.81588 0.97332 0.90340 0.87532 0.88830 0.90586 0.85932 0.91291 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.52 11.83 21.85 0.26 -47.26 14 2 C 0.03 1.43 5.50 85.32 0.47 1.90 14 3 Si 1.02 39.13 29.56 68.60 2.03 41.16 14 4 H -0.25 -9.10 7.11 99.48 0.71 -8.39 14 5 H -0.26 -9.57 7.11 99.48 0.71 -8.86 14 6 H -0.25 -9.00 7.11 99.48 0.71 -8.30 14 7 C -0.54 -31.11 9.67 24.80 0.24 -30.87 14 8 H 0.10 5.09 7.85 -2.91 -0.02 5.07 14 9 C 0.46 27.84 7.88 69.89 0.55 28.39 14 10 O -0.60 -39.80 14.33 19.48 0.28 -39.52 14 11 O -0.37 -19.33 9.87 -59.19 -0.58 -19.91 14 12 C 0.05 1.97 3.22 31.95 0.10 2.08 14 13 H 0.06 2.98 7.27 -2.39 -0.02 2.96 14 14 C -0.14 -4.23 6.91 32.14 0.22 -4.01 14 15 C 0.05 1.32 7.77 72.65 0.56 1.88 14 16 O -0.39 -13.68 11.36 -148.98 -1.69 -15.37 14 17 C 0.04 1.81 7.58 72.45 0.55 2.36 14 18 H 0.29 14.99 8.29 -92.70 -0.77 14.22 14 19 H 0.11 2.74 8.14 -2.39 -0.02 2.72 14 20 H 0.09 2.72 8.14 -2.39 -0.02 2.70 14 21 H 0.08 1.75 8.14 -2.39 -0.02 1.73 14 22 H 0.12 2.32 8.14 -2.39 -0.02 2.30 14 23 H 0.07 2.86 8.05 -2.39 -0.02 2.84 14 24 H 0.06 2.51 8.14 -2.39 -0.02 2.49 14 Total: -1.00 -71.87 218.95 4.18 -67.68 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 1.20 Total: 11.48 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 2.70 Total: 1.74 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.26 Total: -47.26 kcal Atomic # 8 Polarization: -72.81 SS G_CDS: -2.00 Total: -74.80 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -71.87 4.18 -67.68 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039089295.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.614 kcal (2) G-P(sol) polarization free energy of solvation -71.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds