Wall clock time and date at job start Mon Mar 30 2020 01:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46953 * 110.99957 * 2 1 4 4 C 1.53052 * 109.36665 * 183.18733 * 3 2 1 5 5 N 1.46953 * 109.36189 * 301.59935 * 4 3 2 6 6 N 1.36605 * 110.99904 * 183.18450 * 5 4 3 7 7 C 1.36945 * 119.99870 * 119.99736 * 6 5 4 8 8 H 1.07997 * 119.99756 * 359.97438 * 7 6 5 9 9 C 1.38805 * 119.99878 * 179.97438 * 7 6 5 10 10 N 1.31624 * 120.00257 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99929 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47187 * 179.97438 * 11 9 7 13 13 H 1.48494 * 109.47141 * 300.00154 * 11 9 7 14 14 H 1.48498 * 109.47018 * 60.00200 * 11 9 7 15 15 C 1.46957 * 110.88578 * 59.31662 * 5 4 3 16 16 C 1.46958 * 110.99732 * 123.79505 * 2 1 3 17 17 H 1.08997 * 109.46514 * 60.00509 * 1 2 3 18 18 H 1.08997 * 109.46845 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.47083 * 300.00325 * 1 2 3 20 20 H 1.08995 * 109.49752 * 63.21830 * 3 2 1 21 21 H 1.09001 * 109.50599 * 303.15906 * 3 2 1 22 22 H 1.08992 * 109.49333 * 181.62740 * 4 3 2 23 23 H 1.09009 * 109.50682 * 61.56929 * 4 3 2 24 24 H 0.96996 * 120.00346 * 299.99725 * 6 5 4 25 25 H 0.97001 * 119.99885 * 179.97438 * 10 9 7 26 26 H 1.09007 * 109.48660 * 60.64735 * 15 5 4 27 27 H 1.08996 * 109.48875 * 180.71274 * 15 5 4 28 28 H 1.08998 * 109.49243 * 296.77913 * 16 2 1 29 29 H 1.09002 * 109.49142 * 56.82393 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3291 -0.0803 5 7 4.0501 0.5659 1.0598 6 7 5.4161 0.5659 1.0598 7 6 6.1008 1.0896 2.1239 8 1 5.5608 1.5030 2.9629 9 6 7.4889 1.0891 2.1242 10 7 8.1470 0.5857 1.1015 11 14 8.4229 1.8041 3.5754 12 1 9.8828 1.6830 3.3326 13 1 8.0646 3.2360 3.7376 14 1 8.0636 1.0610 4.8098 15 6 3.5235 -0.8060 1.0599 16 6 1.9956 -0.7631 1.1402 17 1 -0.3632 0.5138 -0.8900 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 1.6938 1.8775 0.9172 21 1 1.6015 1.9131 -0.8601 22 1 3.9178 2.3448 -0.0513 23 1 3.8258 0.8480 -1.0106 24 1 5.9012 0.1950 0.3062 25 1 9.1170 0.5857 1.1015 26 1 3.8254 -1.3115 0.1426 27 1 3.9178 -1.3468 1.9202 28 1 1.6938 -0.2820 2.0704 29 1 1.6010 -1.7788 1.1114 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039113454.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:23 Heat of formation + Delta-G solvation = 31.758522 kcal Electronic energy + Delta-G solvation = -11646.776243 eV Core-core repulsion = 9605.489797 eV Total energy + Delta-G solvation = -2041.286446 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.122 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.18297 -37.18926 -34.44187 -31.87931 -31.52416 -28.12258 -25.51446 -24.45186 -23.71665 -20.91697 -19.26724 -18.04770 -16.33804 -16.06502 -15.90624 -15.78582 -15.59892 -15.43203 -14.28458 -13.41088 -13.16327 -13.01322 -12.93195 -12.68574 -12.26106 -12.25600 -12.19214 -11.91366 -11.67095 -11.08908 -9.43377 -9.27287 -9.20536 -7.95850 -5.29979 1.49110 1.53893 1.59867 2.45783 2.98771 3.04734 3.39159 3.87193 4.10726 4.20830 4.34794 4.35931 4.53818 4.65770 4.70542 4.82041 4.82580 4.94416 5.01744 5.04318 5.13089 5.61556 5.98442 6.13448 6.27013 6.44783 7.28968 8.17626 8.53265 9.28177 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.087446 B = 0.009165 C = 0.009130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 320.119849 B = 3054.519428 C = 3066.141886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.560 5.560 3 C 0.071 3.929 4 C 0.042 3.958 5 N -0.304 5.304 6 N -0.590 5.590 7 C -0.220 4.220 8 H 0.078 0.922 9 C -0.075 4.075 10 N -0.976 5.976 11 Si 0.987 3.013 12 H -0.294 1.294 13 H -0.276 1.276 14 H -0.276 1.276 15 C 0.041 3.959 16 C 0.071 3.929 17 H 0.080 0.920 18 H 0.079 0.921 19 H 0.029 0.971 20 H 0.040 0.960 21 H 0.100 0.900 22 H 0.066 0.934 23 H 0.022 0.978 24 H 0.360 0.640 25 H 0.253 0.747 26 H 0.021 0.979 27 H 0.065 0.935 28 H 0.040 0.960 29 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.248 -0.544 -1.018 14.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.285 5.285 3 C -0.058 4.058 4 C -0.087 4.087 5 N -0.121 5.121 6 N -0.324 5.324 7 C -0.351 4.351 8 H 0.096 0.904 9 C -0.267 4.267 10 N -0.626 5.626 11 Si 0.815 3.185 12 H -0.220 1.220 13 H -0.202 1.202 14 H -0.202 1.202 15 C -0.088 4.088 16 C -0.058 4.058 17 H 0.098 0.902 18 H 0.098 0.902 19 H 0.048 0.952 20 H 0.058 0.942 21 H 0.118 0.882 22 H 0.084 0.916 23 H 0.040 0.960 24 H 0.196 0.804 25 H 0.062 0.938 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.211 -0.465 -0.860 14.245 hybrid contribution 1.071 0.069 0.160 1.085 sum -13.140 -0.397 -0.700 13.164 Atomic orbital electron populations 1.22409 0.85184 1.03059 1.01396 1.62168 1.09565 1.13803 1.42955 1.22083 0.92404 0.89664 1.01621 1.22652 0.95467 0.98492 0.92086 1.62620 0.96360 1.12419 1.40688 1.41948 0.94998 1.73472 1.22006 1.19439 0.88520 1.30365 0.96790 0.90412 1.25623 0.96921 1.02929 1.01227 1.69839 1.06890 1.53142 1.32774 0.85016 0.76741 0.78328 0.78413 1.22018 1.20232 1.20240 1.22683 0.95421 0.91075 0.99641 1.22086 0.92450 0.99381 0.91869 0.90153 0.90178 0.95190 0.94186 0.88226 0.91594 0.95971 0.80445 0.93829 0.96056 0.91698 0.94211 0.88277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.60 127.69 1.23 1.75 15 2 N -0.56 -15.52 4.97 -921.94 -4.58 -20.10 15 3 C 0.07 2.10 5.62 86.31 0.49 2.59 15 4 C 0.04 1.63 6.01 86.31 0.52 2.15 15 5 N -0.30 -13.74 4.93 -513.43 -2.53 -16.27 15 6 N -0.59 -32.12 4.82 -54.27 -0.26 -32.38 15 7 C -0.22 -12.77 10.30 84.03 0.87 -11.90 15 8 H 0.08 4.41 7.83 -2.91 -0.02 4.39 15 9 C -0.07 -4.36 5.50 84.86 0.47 -3.89 15 10 N -0.98 -60.67 13.06 21.65 0.28 -60.39 15 11 Si 0.99 46.84 29.55 68.60 2.03 48.86 15 12 H -0.29 -13.95 7.11 99.48 0.71 -13.24 15 13 H -0.28 -12.60 7.11 99.48 0.71 -11.90 15 14 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 15 C 0.04 1.59 6.01 86.31 0.52 2.11 15 16 C 0.07 2.10 5.62 86.31 0.49 2.59 15 17 H 0.08 1.35 8.14 -2.39 -0.02 1.33 15 18 H 0.08 1.34 8.13 -2.39 -0.02 1.32 15 19 H 0.03 0.56 8.14 -2.39 -0.02 0.54 15 20 H 0.04 1.19 8.14 -2.39 -0.02 1.17 15 21 H 0.10 2.41 8.14 -2.39 -0.02 2.39 15 22 H 0.07 2.68 8.14 -2.39 -0.02 2.66 15 23 H 0.02 0.89 8.14 -2.38 -0.02 0.87 15 24 H 0.36 21.00 8.03 -215.50 -1.73 19.27 15 25 H 0.25 15.19 8.31 -92.71 -0.77 14.42 15 26 H 0.02 0.86 8.14 -2.38 -0.02 0.84 15 27 H 0.06 2.66 8.14 -2.39 -0.02 2.64 15 28 H 0.04 1.19 8.14 -2.39 -0.02 1.17 15 29 H 0.10 2.41 8.13 -2.39 -0.02 2.39 15 Total: -1.00 -65.39 241.02 -1.12 -66.51 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -0.62 Total: 18.37 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 4.57 Total: -4.60 kcal Atomic # 7 Polarization: -122.04 SS G_CDS: -7.09 Total: -129.14 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.86 kcal Total: -65.39 -1.12 -66.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039113454.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.267 kcal (2) G-P(sol) polarization free energy of solvation -65.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds