Wall clock time and date at job start Mon Mar 30 2020 02:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47334 * 2 1 4 4 C 1.53003 * 109.46946 * 119.99255 * 2 1 3 5 5 C 1.50703 * 109.47332 * 295.00408 * 4 2 1 6 6 H 1.08000 * 119.99730 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00240 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00377 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 119.99652 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47132 * 89.99825 * 9 7 5 11 11 H 1.48502 * 109.46795 * 209.99382 * 9 7 5 12 12 H 1.48490 * 109.47295 * 329.99361 * 9 7 5 13 13 C 1.52997 * 109.47728 * 239.99385 * 2 1 3 14 14 O 1.44388 * 110.16543 * 307.33593 * 13 2 1 15 15 C 1.44833 * 103.23385 * 158.42519 * 14 13 2 16 16 C 1.54448 * 102.89755 * 323.38932 * 15 14 13 17 17 O 1.43789 * 110.11243 * 64.10650 * 13 2 1 18 18 H 1.08997 * 109.47827 * 300.00968 * 1 2 3 19 19 H 1.09003 * 109.46921 * 60.00872 * 1 2 3 20 20 H 1.08998 * 109.47334 * 179.97438 * 1 2 3 21 21 H 1.09007 * 109.47101 * 54.99974 * 4 2 1 22 22 H 1.09002 * 109.47422 * 175.00084 * 4 2 1 23 23 H 0.96994 * 120.00301 * 180.02562 * 8 7 5 24 24 H 1.09002 * 110.09629 * 185.70250 * 13 2 1 25 25 H 1.08998 * 110.72890 * 205.03571 * 15 14 13 26 26 H 1.09001 * 110.72939 * 81.73632 * 15 14 13 27 27 H 1.09003 * 110.31923 * 262.89392 * 16 15 14 28 28 H 1.08998 * 110.32459 * 140.69472 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6411 0.0573 2.4767 6 1 1.0805 0.9748 2.3756 7 6 1.9921 -0.4018 3.7284 8 7 1.6445 0.2777 4.7995 9 14 2.9625 -1.9885 3.9031 10 1 4.4160 -1.6849 3.8795 11 1 2.6143 -2.6425 5.1901 12 1 2.6287 -2.8992 2.7788 13 6 2.0401 -0.7213 -1.2491 14 8 1.4311 -2.0263 -1.3539 15 6 1.5714 -2.3458 -2.7596 16 6 1.3617 -0.9784 -3.4464 17 8 1.6491 -0.0009 -2.4304 18 1 -0.3634 0.5139 0.8898 19 1 -0.3633 0.5137 -0.8901 20 1 -0.3634 -1.0276 -0.0005 21 1 1.6052 -1.7197 1.2954 22 1 3.1263 -0.7994 1.2058 23 1 1.8918 -0.0451 5.6801 24 1 3.1253 -0.8162 -1.2099 25 1 0.8059 -3.0559 -3.0721 26 1 2.5681 -2.7340 -2.9693 27 1 0.3306 -0.8795 -3.7859 28 1 2.0494 -0.8664 -4.2847 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039147530.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:02 Heat of formation + Delta-G solvation = -103.640142 kcal Electronic energy + Delta-G solvation = -11820.670634 eV Core-core repulsion = 9643.501448 eV Total energy + Delta-G solvation = -2177.169186 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.07084 -34.97331 -34.61875 -32.11371 -29.46245 -27.37226 -25.17639 -23.03415 -22.13027 -19.23484 -16.96322 -16.86997 -15.98816 -15.77020 -14.69413 -14.13060 -13.46950 -13.17190 -13.07983 -12.37835 -12.28817 -11.78566 -11.50915 -11.00361 -10.93979 -10.59772 -10.12311 -9.98812 -9.74136 -9.68090 -9.27078 -8.97221 -8.48845 -5.99566 -3.96871 3.34506 3.41934 3.48306 3.78954 4.28487 4.50232 4.70309 4.87961 5.17121 5.33836 5.41265 5.45107 5.64404 5.72604 6.01970 6.07091 6.46681 6.53681 6.81178 6.96121 7.15171 7.26618 7.27126 7.52538 7.83249 8.58478 9.05246 9.62953 11.13682 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.064178 B = 0.011037 C = 0.009997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.182000 B = 2536.241479 C = 2800.048222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.075 4.075 3 H 0.081 0.919 4 C -0.006 4.006 5 C -0.514 4.514 6 H 0.075 0.925 7 C 0.067 3.933 8 N -0.904 5.904 9 Si 0.876 3.124 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.264 1.264 13 C 0.230 3.770 14 O -0.363 6.363 15 C 0.010 3.990 16 C 0.021 3.979 17 O -0.386 6.386 18 H 0.066 0.934 19 H 0.037 0.963 20 H 0.050 0.950 21 H 0.025 0.975 22 H 0.010 0.990 23 H 0.262 0.738 24 H 0.070 0.930 25 H 0.102 0.898 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.604 -4.755 -14.611 15.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.094 4.094 3 H 0.099 0.901 4 C -0.043 4.043 5 C -0.552 4.552 6 H 0.093 0.907 7 C -0.134 4.134 8 N -0.544 5.544 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.188 1.188 13 C 0.136 3.864 14 O -0.283 6.283 15 C -0.067 4.067 16 C -0.056 4.056 17 O -0.307 6.307 18 H 0.085 0.915 19 H 0.056 0.944 20 H 0.069 0.931 21 H 0.043 0.957 22 H 0.028 0.972 23 H 0.072 0.928 24 H 0.087 0.913 25 H 0.120 0.880 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.501 -4.662 -14.245 14.997 hybrid contribution 0.719 -0.964 0.031 1.204 sum 1.220 -5.626 -14.214 15.335 Atomic orbital electron populations 1.21566 0.94662 1.01442 1.00729 1.21278 0.97329 0.99311 0.91459 0.90070 1.19578 0.95457 0.96675 0.92597 1.21097 1.35582 1.09521 0.89007 0.90705 1.24995 0.95656 0.96895 0.95876 1.69910 1.47175 1.39282 0.98008 0.86822 0.80572 0.84616 0.77614 1.20372 1.21418 1.18836 1.24768 0.95584 0.78478 0.87562 1.89554 1.80714 1.34544 1.23457 1.24188 1.02420 0.97618 0.82476 1.23864 1.01755 0.87864 0.92099 1.88910 1.88751 1.31101 1.21939 0.91477 0.94429 0.93078 0.95678 0.97209 0.92795 0.91268 0.88029 0.91334 0.90381 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 8.68 37.16 0.32 -2.29 15 2 C -0.08 -1.60 2.45 -90.62 -0.22 -1.83 15 3 H 0.08 1.75 8.14 -51.93 -0.42 1.32 15 4 C -0.01 -0.14 3.40 -27.88 -0.09 -0.24 15 5 C -0.51 -14.85 8.96 -34.44 -0.31 -15.16 15 6 H 0.07 2.30 7.30 -52.49 -0.38 1.92 15 7 C 0.07 1.97 5.47 -17.82 -0.10 1.88 15 8 N -0.90 -28.25 13.96 55.43 0.77 -27.48 15 9 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 15 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 15 11 H -0.29 -7.22 7.11 56.52 0.40 -6.81 15 12 H -0.26 -6.52 6.54 56.52 0.37 -6.15 15 13 C 0.23 4.23 3.49 37.16 0.13 4.36 15 14 O -0.36 -6.52 10.37 -59.28 -0.61 -7.13 15 15 C 0.01 0.13 7.81 37.92 0.30 0.42 15 16 C 0.02 0.26 8.08 37.92 0.31 0.57 15 17 O -0.39 -6.54 10.80 -59.28 -0.64 -7.18 15 18 H 0.07 1.48 6.95 -51.93 -0.36 1.12 15 19 H 0.04 0.69 7.83 -51.93 -0.41 0.29 15 20 H 0.05 1.05 7.54 -51.93 -0.39 0.66 15 21 H 0.02 0.64 7.11 -51.92 -0.37 0.27 15 22 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 15 23 H 0.26 7.67 8.31 -40.82 -0.34 7.33 15 24 H 0.07 1.21 8.14 -51.93 -0.42 0.79 15 25 H 0.10 1.01 8.14 -51.93 -0.42 0.59 15 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 27 H 0.08 0.86 8.14 -51.93 -0.42 0.43 15 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 15 LS Contribution 233.14 15.07 3.51 3.51 Total: -1.00 -31.96 233.14 -5.31 -37.28 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: -4.01 Total: -4.25 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 0.33 Total: -12.28 kcal Atomic # 7 Polarization: -28.25 SS G_CDS: 0.77 Total: -27.48 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -1.25 Total: -14.32 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -31.96 -5.31 -37.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039147530.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.365 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds