Wall clock time and date at job start Mon Mar 30 2020 02:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46828 * 2 1 4 4 C 1.53006 * 109.46811 * 240.00037 * 2 1 3 5 5 C 1.50698 * 109.47184 * 65.00358 * 4 2 1 6 6 H 1.08005 * 119.99819 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00046 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99809 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99912 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47123 * 90.00333 * 9 7 5 11 11 H 1.48506 * 109.46940 * 210.00455 * 9 7 5 12 12 H 1.48493 * 109.47121 * 329.99876 * 9 7 5 13 13 C 1.52999 * 109.47251 * 120.00232 * 2 1 3 14 14 O 1.43752 * 109.63268 * 59.35979 * 13 2 1 15 15 C 1.44777 * 104.81683 * 215.80684 * 14 13 2 16 16 C 1.54917 * 101.72011 * 36.10665 * 15 14 13 17 17 O 1.43371 * 109.63021 * 299.99914 * 13 2 1 18 18 H 1.09009 * 109.47170 * 60.00031 * 1 2 3 19 19 H 1.09001 * 109.47273 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.46911 * 299.99883 * 1 2 3 21 21 H 1.09001 * 109.47002 * 184.99763 * 4 2 1 22 22 H 1.08993 * 109.46955 * 305.00200 * 4 2 1 23 23 H 0.97004 * 119.99097 * 179.97438 * 8 7 5 24 24 H 1.09000 * 109.62723 * 179.60686 * 13 2 1 25 25 H 1.09001 * 110.98181 * 277.99759 * 15 14 13 26 26 H 1.09005 * 111.00773 * 154.22446 * 15 14 13 27 27 H 1.09003 * 110.69525 * 206.03607 * 16 15 14 28 28 H 1.09006 * 110.84006 * 82.90181 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9923 -0.4022 -3.7284 8 7 1.6439 0.2768 -4.7995 9 14 2.9625 -1.9889 -3.9029 10 1 2.0232 -3.1332 -4.0191 11 1 3.8107 -1.9191 -5.1199 12 1 3.8250 -2.1756 -2.7086 13 6 2.0400 -0.7213 1.2492 14 8 1.5505 -2.0728 1.2602 15 6 1.2998 -2.3644 2.6560 16 6 0.7842 -0.9989 3.1751 17 8 1.5640 -0.0481 2.4221 18 1 -0.3634 0.5139 -0.8901 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 3.1263 -0.7995 -1.2057 22 1 1.6053 -1.7197 -1.2952 23 1 1.8912 -0.0462 -5.6801 24 1 3.1300 -0.7289 1.2482 25 1 2.2189 -2.6537 3.1655 26 1 0.5371 -3.1358 2.7632 27 1 0.9765 -0.8952 4.2430 28 1 -0.2783 -0.8795 2.9630 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039147531.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:03 Heat of formation + Delta-G solvation = -124.864534 kcal Electronic energy + Delta-G solvation = -11873.551159 eV Core-core repulsion = 9695.461615 eV Total energy + Delta-G solvation = -2178.089544 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.36398 -36.64626 -35.90914 -34.21774 -30.70175 -29.34838 -26.61205 -24.38343 -23.79582 -20.89830 -19.04019 -18.18477 -17.42460 -16.96910 -16.23964 -15.61681 -14.99826 -14.76474 -14.50808 -14.28456 -13.70254 -13.44210 -12.91379 -12.84596 -12.60140 -12.39460 -11.86536 -11.74027 -11.50669 -11.24541 -11.07901 -10.75177 -10.36639 -8.27723 -6.30444 1.35906 1.36706 1.49639 2.37115 2.58654 3.06698 3.09739 3.76944 3.97431 4.05663 4.16936 4.31993 4.36341 4.63834 4.66924 4.79359 4.84363 5.03097 5.05639 5.20584 5.32116 5.42643 5.60863 5.68346 6.17795 6.31478 6.75980 7.33168 8.88872 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.064286 B = 0.011281 C = 0.010213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.449287 B = 2481.410877 C = 2740.982458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.092 4.092 3 H 0.068 0.932 4 C 0.003 3.997 5 C -0.522 4.522 6 H 0.037 0.963 7 C 0.005 3.995 8 N -0.951 5.951 9 Si 0.947 3.053 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.250 1.250 13 C 0.244 3.756 14 O -0.394 6.394 15 C 0.008 3.992 16 C 0.015 3.985 17 O -0.401 6.401 18 H 0.038 0.962 19 H 0.050 0.950 20 H 0.058 0.942 21 H 0.016 0.984 22 H 0.018 0.982 23 H 0.266 0.734 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.129 0.871 27 H 0.127 0.873 28 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.005 -6.469 16.500 17.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.111 4.111 3 H 0.086 0.914 4 C -0.034 4.034 5 C -0.560 4.560 6 H 0.055 0.945 7 C -0.192 4.192 8 N -0.592 5.592 9 Si 0.771 3.229 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.174 1.174 13 C 0.149 3.851 14 O -0.314 6.314 15 C -0.067 4.067 16 C -0.061 4.061 17 O -0.322 6.322 18 H 0.057 0.943 19 H 0.069 0.931 20 H 0.077 0.923 21 H 0.034 0.966 22 H 0.037 0.963 23 H 0.075 0.925 24 H 0.101 0.899 25 H 0.108 0.892 26 H 0.146 0.854 27 H 0.145 0.855 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.025 -6.390 16.190 17.406 hybrid contribution 0.263 -0.331 -0.646 0.772 sum 0.289 -6.721 15.545 16.938 Atomic orbital electron populations 1.21472 0.94556 1.01108 1.00391 1.21418 0.97536 0.98936 0.93171 0.91409 1.19399 0.95796 0.95723 0.92498 1.21423 1.34680 1.08769 0.91163 0.94488 1.25951 0.96888 1.00874 0.95440 1.70068 1.48908 1.41546 0.98708 0.85699 0.79410 0.79559 0.78237 1.19382 1.20747 1.17362 1.24052 0.96392 0.78522 0.86153 1.89293 1.86362 1.28924 1.26868 1.24665 1.02816 0.98726 0.80520 1.24430 0.96548 0.86794 0.98281 1.88849 1.70211 1.37886 1.35278 0.94315 0.93109 0.92308 0.96574 0.96328 0.92542 0.89928 0.89226 0.85352 0.85507 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.75 8.71 71.98 0.63 -4.12 15 2 C -0.09 -3.87 2.45 -10.79 -0.03 -3.90 15 3 H 0.07 2.97 8.14 -2.39 -0.02 2.95 15 4 C 0.00 0.16 3.31 29.85 0.10 0.26 15 5 C -0.52 -31.06 8.96 25.60 0.23 -30.83 15 6 H 0.04 2.40 7.30 -2.91 -0.02 2.38 15 7 C 0.00 0.30 5.47 84.65 0.46 0.76 15 8 N -0.95 -61.01 13.96 21.45 0.30 -60.71 15 9 Si 0.95 45.99 27.47 68.60 1.88 47.87 15 10 H -0.27 -12.61 7.11 99.48 0.71 -11.90 15 11 H -0.28 -13.26 7.11 99.48 0.71 -12.56 15 12 H -0.25 -11.42 6.54 99.48 0.65 -10.77 15 13 C 0.24 8.46 3.65 71.98 0.26 8.73 15 14 O -0.39 -13.04 10.12 -126.22 -1.28 -14.32 15 15 C 0.01 0.17 7.95 72.64 0.58 0.75 15 16 C 0.02 0.32 8.07 72.64 0.59 0.90 15 17 O -0.40 -12.33 10.55 -126.22 -1.33 -13.66 15 18 H 0.04 1.74 6.95 -2.38 -0.02 1.72 15 19 H 0.05 1.99 7.67 -2.39 -0.02 1.97 15 20 H 0.06 2.05 7.69 -2.39 -0.02 2.03 15 21 H 0.02 0.78 7.20 -2.39 -0.02 0.77 15 22 H 0.02 0.92 7.28 -2.39 -0.02 0.91 15 23 H 0.27 15.87 8.31 -92.71 -0.77 15.10 15 24 H 0.08 2.78 8.14 -2.39 -0.02 2.76 15 25 H 0.09 1.54 8.14 -2.39 -0.02 1.52 15 26 H 0.13 2.00 8.14 -2.38 -0.02 1.99 15 27 H 0.13 1.78 8.14 -2.39 -0.02 1.76 15 28 H 0.08 1.56 8.14 -2.38 -0.02 1.54 15 Total: -1.00 -69.57 232.69 3.46 -66.11 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: 1.07 Total: 2.15 kcal Atomic # 6 Polarization: -30.26 SS G_CDS: 2.82 Total: -27.44 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: 0.30 Total: -60.71 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -2.61 Total: -27.98 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.88 Total: 47.87 kcal Total: -69.57 3.46 -66.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039147531.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.758 kcal (2) G-P(sol) polarization free energy of solvation -69.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds