Wall clock time and date at job start Mon Mar 30 2020 01:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30537 * 1 3 3 Si 1.86793 * 119.99861 * 2 1 4 4 H 1.48493 * 109.47370 * 274.85773 * 3 2 1 5 5 H 1.48505 * 109.47144 * 34.85976 * 3 2 1 6 6 H 1.48502 * 109.47049 * 154.85762 * 3 2 1 7 7 C 1.40663 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99505 * 173.75880 * 7 2 1 9 9 C 1.38807 * 120.00390 * 353.76456 * 7 2 1 10 10 C 1.37967 * 126.24476 * 335.66735 * 9 7 2 11 11 C 1.46014 * 110.36800 * 179.97438 * 10 9 7 12 12 C 1.40640 * 131.50887 * 180.02562 * 11 10 9 13 13 C 1.37627 * 119.84417 * 180.27485 * 12 11 10 14 14 C 1.38573 * 120.40075 * 359.40935 * 13 12 11 15 15 C 1.38612 * 120.27111 * 0.61107 * 14 13 12 16 16 C 1.37465 * 120.08799 * 359.68511 * 15 14 13 17 17 C 1.50929 * 132.61693 * 180.02562 * 16 15 14 18 18 H 0.96997 * 120.00349 * 0.02562 * 1 2 3 19 19 H 1.07999 * 124.81863 * 359.97438 * 10 9 7 20 20 H 1.07990 * 120.07485 * 359.97438 * 12 11 10 21 21 H 1.08002 * 119.79817 * 179.71905 * 13 12 11 22 22 H 1.07997 * 119.86346 * 180.30244 * 14 13 12 23 23 H 1.08001 * 119.95519 * 179.70886 * 15 14 13 24 24 H 1.09007 * 110.21191 * 299.03287 * 17 16 15 25 25 H 1.09002 * 110.21066 * 60.93482 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 2.3841 2.1057 -1.3950 5 1 1.4918 2.6208 0.8003 6 1 3.5844 1.4127 0.5949 7 6 2.0086 -1.2182 0.0005 8 1 3.0838 -1.2209 -0.1011 9 6 1.3208 -2.4167 0.1316 10 6 0.0843 -2.5875 0.7193 11 6 -0.3131 -3.9916 0.6681 12 6 -1.4675 -4.6509 1.1272 13 6 -1.5938 -6.0105 0.9550 14 6 -0.5957 -6.7328 0.3209 15 6 0.5467 -6.0940 -0.1354 16 6 0.6919 -4.7376 0.0336 17 6 1.7896 -3.7725 -0.3429 18 1 -0.4850 0.8400 -0.0004 19 1 -0.5060 -1.7951 1.1553 20 1 -2.2506 -4.0923 1.6179 21 1 -2.4786 -6.5167 1.3120 22 1 -0.7061 -7.7986 0.1861 23 1 1.3236 -6.6627 -0.6248 24 1 2.7192 -4.0460 0.1563 25 1 1.9300 -3.7650 -1.4239 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044369910.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:09 Heat of formation + Delta-G solvation = 9.176102 kcal Electronic energy + Delta-G solvation = -10379.800262 eV Core-core repulsion = 8514.832076 eV Total energy + Delta-G solvation = -1864.968186 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 186.074 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.42354 -37.00803 -34.83043 -31.81383 -30.46580 -27.55849 -26.90984 -22.74484 -21.50733 -20.83642 -18.18758 -17.15719 -16.57525 -15.70718 -15.52350 -15.07104 -14.37735 -14.11561 -13.45976 -13.29585 -12.96916 -12.77887 -12.57891 -11.90288 -11.81748 -11.70036 -11.36005 -11.19739 -10.28635 -9.43613 -8.79264 -8.66849 -6.32854 0.48279 0.76810 1.36899 1.39175 1.54211 2.04059 2.17647 2.98838 3.50646 3.97163 4.31803 4.38542 4.47348 4.65974 4.83358 4.93637 4.96786 5.01920 5.10145 5.41177 5.63085 5.72831 5.84130 5.96200 5.97800 6.34918 6.53131 6.64872 6.96324 7.00928 8.25161 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.085996 B = 0.010164 C = 0.009233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 325.517066 B = 2754.038015 C = 3032.020827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.021 3.979 3 Si 0.999 3.001 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.250 1.250 7 C -0.454 4.454 8 H 0.093 0.907 9 C 0.047 3.953 10 C -0.364 4.364 11 C -0.016 4.016 12 C -0.197 4.197 13 C -0.102 4.102 14 C -0.191 4.191 15 C -0.087 4.087 16 C -0.187 4.187 17 C -0.051 4.051 18 H 0.290 0.710 19 H 0.089 0.911 20 H 0.102 0.898 21 H 0.139 0.861 22 H 0.145 0.855 23 H 0.134 0.866 24 H 0.088 0.912 25 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.990 -3.897 -0.557 4.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.197 4.197 3 Si 0.818 3.182 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.173 1.173 7 C -0.481 4.481 8 H 0.111 0.889 9 C 0.045 3.955 10 C -0.386 4.386 11 C -0.017 4.017 12 C -0.215 4.215 13 C -0.120 4.120 14 C -0.209 4.209 15 C -0.105 4.105 16 C -0.187 4.187 17 C -0.087 4.087 18 H 0.101 0.899 19 H 0.107 0.893 20 H 0.120 0.880 21 H 0.157 0.843 22 H 0.163 0.837 23 H 0.152 0.848 24 H 0.106 0.894 25 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.790 -3.759 -0.572 4.203 hybrid contribution -0.180 0.958 0.093 0.979 sum 1.610 -2.801 -0.480 3.266 Atomic orbital electron populations 1.69836 1.09763 1.30875 1.32478 1.27219 0.95621 1.05342 0.91482 0.84946 0.79038 0.74649 0.79604 1.18266 1.19407 1.17318 1.19392 0.95910 0.90697 1.42091 0.88891 1.19858 0.93726 0.92722 0.89240 1.21732 1.03804 0.91994 1.21068 1.20248 0.93539 0.94631 0.93234 1.20951 0.97900 0.95579 1.07113 1.21070 0.99483 0.92853 0.98558 1.21145 0.94927 1.00332 1.04487 1.20505 0.98527 0.91946 0.99540 1.20757 0.98035 0.94641 1.05261 1.19818 0.96695 0.91879 1.00294 0.89906 0.89266 0.88019 0.84312 0.83708 0.84827 0.89389 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.45 10.97 21.96 0.24 -43.21 15 2 C 0.02 1.04 5.44 85.48 0.47 1.51 15 3 Si 1.00 37.03 29.57 68.60 2.03 39.05 15 4 H -0.26 -9.10 7.11 99.48 0.71 -8.39 15 5 H -0.27 -9.68 7.11 99.48 0.71 -8.98 15 6 H -0.25 -8.82 7.11 99.48 0.71 -8.11 15 7 C -0.45 -23.93 9.34 23.00 0.21 -23.72 15 8 H 0.09 4.47 7.86 -2.91 -0.02 4.44 15 9 C 0.05 2.60 5.90 -19.67 -0.12 2.48 15 10 C -0.36 -21.18 9.65 24.22 0.23 -20.95 15 11 C -0.02 -0.85 6.20 -20.17 -0.13 -0.97 15 12 C -0.20 -9.01 10.13 22.71 0.23 -8.78 15 13 C -0.10 -3.81 10.01 22.21 0.22 -3.59 15 14 C -0.19 -6.68 10.06 22.44 0.23 -6.46 15 15 C -0.09 -3.36 10.03 22.18 0.22 -3.14 15 16 C -0.19 -8.74 6.35 -19.47 -0.12 -8.86 15 17 C -0.05 -2.37 6.69 29.30 0.20 -2.17 15 18 H 0.29 14.03 8.29 -92.71 -0.77 13.26 15 19 H 0.09 5.58 6.56 -2.91 -0.02 5.56 15 20 H 0.10 4.47 8.06 -2.92 -0.02 4.45 15 21 H 0.14 4.09 8.06 -2.91 -0.02 4.07 15 22 H 0.15 3.86 8.06 -2.91 -0.02 3.84 15 23 H 0.13 4.19 8.06 -2.91 -0.02 4.17 15 24 H 0.09 3.70 8.14 -2.38 -0.02 3.68 15 25 H 0.09 3.73 8.14 -2.39 -0.02 3.71 15 Total: -1.00 -62.19 222.88 5.09 -57.10 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 1.18 Total: 21.70 kcal Atomic # 6 Polarization: -76.29 SS G_CDS: 1.65 Total: -74.64 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.24 Total: -43.21 kcal Atomic # 14 Polarization: 37.03 SS G_CDS: 2.03 Total: 39.05 kcal Total: -62.19 5.09 -57.10 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369910.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.276 kcal (2) G-P(sol) polarization free energy of solvation -62.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds