Wall clock time and date at job start Mon Mar 30 2020 01:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30864 * 1 3 3 Si 1.86800 * 120.00061 * 2 1 4 4 H 1.48495 * 109.47254 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47170 * 119.99784 * 3 2 1 6 6 H 1.48504 * 109.47192 * 239.99698 * 3 2 1 7 7 C 1.39919 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00138 * 154.92566 * 7 2 1 9 9 C 1.41276 * 119.99874 * 334.91968 * 7 2 1 10 10 C 1.41019 * 121.03480 * 334.77903 * 9 7 2 11 11 N 1.31945 * 118.83389 * 179.71552 * 10 9 7 12 12 C 1.32292 * 121.14134 * 0.56904 * 11 10 9 13 13 F 1.35094 * 118.83531 * 179.67719 * 12 11 10 14 14 N 1.32214 * 122.33415 * 359.70284 * 12 11 10 15 15 C 1.32190 * 121.01400 * 359.97438 * 14 12 11 16 16 F 1.35101 * 120.62772 * 179.97438 * 15 14 12 17 17 H 0.97003 * 120.00135 * 174.22391 * 1 2 3 18 18 H 1.07994 * 120.58223 * 359.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 1.2777 2.7464 -0.0006 5 1 3.0964 1.6964 1.2125 6 1 3.0965 1.6964 -1.2125 7 6 2.0083 -1.2117 0.0005 8 1 3.0120 -1.2560 -0.3958 9 6 1.4018 -2.3773 0.5197 10 6 0.3766 -2.2953 1.4846 11 7 -0.1634 -3.4115 1.9356 12 6 0.2487 -4.5931 1.5065 13 9 -0.3324 -5.7062 2.0046 14 7 1.2096 -4.7232 0.6076 15 6 1.8077 -3.6633 0.0917 16 9 2.7890 -3.8054 -0.8259 17 1 -0.4850 -0.8358 -0.0845 18 1 0.0366 -1.3357 1.8448 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044370723.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:09 Heat of formation + Delta-G solvation = -56.879254 kcal Electronic energy + Delta-G solvation = -10843.809108 eV Core-core repulsion = 8318.206673 eV Total energy + Delta-G solvation = -2525.602435 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.030 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -47.92119 -47.84667 -39.26883 -34.98769 -32.49589 -30.32388 -25.96126 -23.28950 -22.52447 -18.59743 -17.76647 -17.57520 -15.63681 -15.09073 -14.71658 -14.47973 -14.16339 -13.80919 -12.89132 -12.70162 -12.23142 -11.98137 -11.48104 -11.12532 -10.65020 -10.03843 -9.72360 -9.52553 -8.57379 -8.36580 -7.80112 -5.05442 1.93596 2.02220 2.91867 2.97191 3.13906 3.64134 4.04136 4.09549 4.79069 4.89259 5.46746 6.17170 6.38101 6.84577 7.02625 7.25265 7.37446 7.66492 7.98689 8.11795 8.92173 9.41093 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.061115 B = 0.013887 C = 0.011775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.040491 B = 2015.760494 C = 2377.392270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.032 3.968 3 Si 1.075 2.925 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.452 4.452 8 H 0.098 0.902 9 C -0.027 4.027 10 C 0.060 3.940 11 N -0.497 5.497 12 C 0.332 3.668 13 F -0.112 7.112 14 N -0.529 5.529 15 C 0.230 3.770 16 F -0.118 7.118 17 H 0.303 0.697 18 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.457 3.102 -0.078 3.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.193 4.193 3 Si 0.895 3.105 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.194 1.194 7 C -0.480 4.480 8 H 0.116 0.884 9 C -0.036 4.036 10 C -0.111 4.111 11 N -0.214 5.214 12 C 0.058 3.942 13 F -0.092 7.092 14 N -0.253 5.253 15 C 0.064 3.936 16 F -0.098 7.098 17 H 0.117 0.883 18 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.723 3.778 0.351 4.167 hybrid contribution 0.615 -1.489 -0.516 1.692 sum 2.338 2.289 -0.165 3.276 Atomic orbital electron populations 1.70541 1.08174 1.34784 1.24453 1.27527 0.95540 1.05127 0.91085 0.83472 0.75674 0.72546 0.78770 1.19128 1.19237 1.19364 1.20730 1.02943 0.92831 1.31465 0.88432 1.19074 0.96287 0.92773 0.95431 1.22825 0.97723 0.94743 0.95813 1.67096 1.28653 0.98052 1.27641 1.17454 0.96086 0.81431 0.99214 1.91510 1.82700 1.48989 1.86006 1.66051 1.10135 1.37015 1.12103 1.17828 0.93312 0.88368 0.94118 1.91472 1.58821 1.96349 1.63130 0.88309 0.81667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.37 12.35 55.55 0.69 -16.68 13 2 C 0.03 0.70 4.99 -17.33 -0.09 0.62 13 3 Si 1.07 18.06 30.00 -169.99 -5.10 12.96 13 4 H -0.27 -4.49 7.11 56.52 0.40 -4.08 13 5 H -0.27 -4.33 7.11 56.52 0.40 -3.92 13 6 H -0.27 -4.30 7.11 56.52 0.40 -3.90 13 7 C -0.45 -10.52 8.78 -37.80 -0.33 -10.85 13 8 H 0.10 2.19 7.87 -52.48 -0.41 1.78 13 9 C -0.03 -0.66 5.33 -106.45 -0.57 -1.23 13 10 C 0.06 1.46 9.24 -16.45 -0.15 1.31 13 11 N -0.50 -12.44 10.42 -14.30 -0.15 -12.59 13 12 C 0.33 8.46 9.44 -91.36 -0.86 7.60 13 13 F -0.11 -2.66 17.32 2.25 0.04 -2.62 13 14 N -0.53 -13.74 10.44 -14.58 -0.15 -13.89 13 15 C 0.23 5.84 8.54 -16.16 -0.14 5.71 13 16 F -0.12 -2.84 16.88 2.25 0.04 -2.81 13 17 H 0.30 7.21 6.65 -40.82 -0.27 6.93 13 18 H 0.17 3.81 6.58 -52.49 -0.35 3.46 13 LS Contribution 186.14 15.07 2.81 2.81 Total: -1.00 -25.60 186.14 -3.80 -29.40 By element: Atomic # 1 Polarization: 0.09 SS G_CDS: 0.17 Total: 0.27 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -2.14 Total: 3.15 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.38 Total: -43.16 kcal Atomic # 9 Polarization: -5.51 SS G_CDS: 0.08 Total: -5.43 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.10 Total: 12.96 kcal Total LS contribution 2.81 Total: 2.81 kcal Total: -25.60 -3.80 -29.40 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044370723.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.481 kcal (2) G-P(sol) polarization free energy of solvation -25.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds