Wall clock time and date at job start Mon Mar 30 2020 01:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30858 * 1 3 3 Si 1.86799 * 120.00218 * 2 1 4 4 H 1.48507 * 109.46776 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46928 * 300.00145 * 3 2 1 6 6 H 1.48499 * 109.47197 * 60.00797 * 3 2 1 7 7 C 1.39956 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99999 * 200.42979 * 7 2 1 9 9 C 1.41218 * 119.99956 * 20.43079 * 7 2 1 10 10 C 1.41362 * 121.07804 * 214.98193 * 9 7 2 11 11 F 1.35096 * 120.63275 * 0.02562 * 10 9 7 12 12 N 1.32269 * 118.73883 * 180.02562 * 10 9 7 13 13 C 1.31967 * 121.11074 * 0.02562 * 12 10 9 14 14 N 1.31965 * 122.45264 * 359.97438 * 13 12 10 15 15 C 1.32255 * 121.11897 * 359.97438 * 14 13 12 16 16 F 1.35103 * 120.63056 * 180.02562 * 15 14 13 17 17 H 0.96998 * 119.99828 * 359.97438 * 1 2 3 18 18 H 1.07997 * 118.76951 * 179.71420 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.7027 1.3462 -0.0006 5 1 1.8839 2.3964 -1.2125 6 1 1.8841 2.3963 1.2126 7 6 2.0083 -1.2121 -0.0005 8 1 3.0373 -1.2417 0.3259 9 6 1.3688 -2.3964 -0.4280 10 6 1.6605 -3.6415 0.1745 11 9 2.5614 -3.7266 1.1776 12 7 1.0346 -4.7216 -0.2626 13 6 0.1533 -4.6496 -1.2422 14 7 -0.1534 -3.5119 -1.8365 15 6 0.4161 -2.3752 -1.4723 16 9 0.0944 -1.2161 -2.0872 17 1 -0.4850 0.8400 0.0004 18 1 -0.3321 -5.5560 -1.5725 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044371019.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:34 Heat of formation + Delta-G solvation = -66.456479 kcal Electronic energy + Delta-G solvation = -11075.701089 eV Core-core repulsion = 8549.683354 eV Total energy + Delta-G solvation = -2526.017734 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.030 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -49.66935 -49.46326 -40.90385 -36.21582 -33.93120 -32.62654 -28.02613 -24.67547 -24.40218 -19.93256 -19.43361 -19.10533 -17.40301 -16.93639 -16.68867 -16.13994 -15.66568 -15.39550 -14.70687 -14.10997 -13.93668 -13.82003 -13.36074 -12.94851 -12.20055 -11.61131 -11.28794 -11.05428 -10.35074 -9.97722 -9.04677 -6.80513 0.17802 0.28546 1.36315 1.43996 1.55829 2.11035 2.47205 2.75861 2.93919 3.12088 3.66629 4.46010 4.66372 4.93514 5.17757 5.38468 5.91956 6.06248 6.27158 6.41366 7.29966 7.97480 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.050493 B = 0.018277 C = 0.014223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.404617 B = 1531.635350 C = 1968.197650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.032 3.968 3 Si 0.998 3.002 4 H -0.248 1.248 5 H -0.261 1.261 6 H -0.257 1.257 7 C -0.448 4.448 8 H 0.106 0.894 9 C -0.037 4.037 10 C 0.215 3.785 11 F -0.118 7.118 12 N -0.533 5.533 13 C 0.203 3.797 14 N -0.541 5.541 15 C 0.256 3.744 16 F -0.109 7.109 17 H 0.305 0.695 18 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.014 1.833 -0.584 2.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.189 4.189 3 Si 0.816 3.184 4 H -0.171 1.171 5 H -0.185 1.185 6 H -0.181 1.181 7 C -0.475 4.475 8 H 0.123 0.877 9 C -0.047 4.047 10 C 0.050 3.950 11 F -0.097 7.097 12 N -0.253 5.253 13 C -0.080 4.080 14 N -0.262 5.262 15 C 0.090 3.910 16 F -0.088 7.088 17 H 0.116 0.884 18 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 1.352 1.156 -0.847 1.970 hybrid contribution 0.502 1.386 0.399 1.527 sum 1.854 2.542 -0.448 3.178 Atomic orbital electron populations 1.69763 1.09746 1.32944 1.28802 1.27010 0.95525 1.05393 0.90948 0.84889 0.79572 0.74396 0.79518 1.17124 1.18510 1.18112 1.19831 1.00024 0.91217 1.36439 0.87657 1.18937 0.96352 0.94931 0.94497 1.18400 0.95574 0.90170 0.90823 1.91442 1.64273 1.96689 1.57339 1.67174 1.10108 1.32273 1.15697 1.24161 0.96780 0.94661 0.92351 1.67202 1.27512 0.99224 1.32231 1.18437 0.98814 0.81171 0.92565 1.91455 1.91526 1.44833 1.81027 0.88393 0.75556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.21 11.06 21.83 0.24 -38.97 13 2 C 0.03 1.50 4.57 85.25 0.39 1.89 13 3 Si 1.00 34.87 29.61 68.60 2.03 36.90 13 4 H -0.25 -8.34 7.11 99.48 0.71 -7.64 13 5 H -0.26 -8.86 7.11 99.48 0.71 -8.15 13 6 H -0.26 -8.43 7.11 99.48 0.71 -7.72 13 7 C -0.45 -22.65 8.71 23.42 0.20 -22.44 13 8 H 0.11 5.04 7.92 -2.91 -0.02 5.01 13 9 C -0.04 -1.98 5.44 -21.01 -0.11 -2.10 13 10 C 0.21 10.92 8.53 85.40 0.73 11.65 13 11 F -0.12 -5.72 16.94 44.97 0.76 -4.96 13 12 N -0.53 -25.32 10.42 -199.02 -2.07 -27.39 13 13 C 0.20 8.90 12.26 180.78 2.22 11.11 13 14 N -0.54 -26.53 10.42 -199.02 -2.07 -28.60 13 15 C 0.26 13.54 7.93 85.40 0.68 14.22 13 16 F -0.11 -5.78 14.35 44.97 0.65 -5.14 13 17 H 0.30 13.42 8.30 -92.71 -0.77 12.65 13 18 H 0.23 7.51 8.06 -2.91 -0.02 7.49 13 Total: -1.00 -57.12 185.86 4.94 -52.18 By element: Atomic # 1 Polarization: 0.33 SS G_CDS: 1.31 Total: 1.64 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 4.10 Total: 14.34 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -3.91 Total: -94.96 kcal Atomic # 9 Polarization: -11.50 SS G_CDS: 1.41 Total: -10.10 kcal Atomic # 14 Polarization: 34.87 SS G_CDS: 2.03 Total: 36.90 kcal Total: -57.12 4.94 -52.18 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044371019.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.275 kcal (2) G-P(sol) polarization free energy of solvation -57.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds