Wall clock time and date at job start Mon Mar 30 2020 02:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00624 * 2 1 4 4 H 1.48495 * 109.47296 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46829 * 299.99787 * 3 2 1 6 6 H 1.48493 * 109.46964 * 59.99619 * 3 2 1 7 7 C 1.37885 * 119.99390 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99414 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00272 * 359.97438 * 7 2 1 10 10 O 1.42904 * 109.47469 * 180.02562 * 9 7 2 11 11 C 1.42895 * 114.00229 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46994 * 180.02562 * 11 10 9 13 13 H 1.09003 * 111.01967 * 302.23274 * 12 11 10 14 14 C 1.55566 * 111.22545 * 177.93021 * 12 11 10 15 15 C 1.54383 * 102.27674 * 207.98163 * 14 12 11 16 16 O 1.43235 * 107.58532 * 21.35887 * 15 14 12 17 17 C 1.43645 * 109.97529 * 1.70714 * 16 15 14 18 18 H 0.97003 * 119.99493 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.47264 * 60.00015 * 9 7 2 20 20 H 1.09000 * 109.46995 * 299.99983 * 9 7 2 21 21 H 1.09001 * 109.46805 * 60.00541 * 11 10 9 22 22 H 1.09000 * 109.47133 * 300.00166 * 11 10 9 23 23 H 1.09007 * 110.84061 * 89.78331 * 14 12 11 24 24 H 1.09000 * 110.83713 * 326.18176 * 14 12 11 25 25 H 1.08995 * 109.83335 * 261.84022 * 15 14 12 26 26 H 1.09003 * 109.82742 * 140.86392 * 15 14 12 27 27 H 1.09002 * 110.30923 * 94.49115 * 17 16 15 28 28 H 1.09000 * 110.31166 * 216.56243 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3963 1.2124 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 8 2.1794 -3.5855 -0.0005 11 6 1.5647 -4.8755 0.0000 12 6 2.6476 -5.9563 0.0006 13 1 3.3078 -5.8488 -0.8601 14 6 2.0225 -7.3799 0.0537 15 6 3.1280 -8.1979 0.7551 16 8 3.9566 -7.2777 1.4749 17 6 3.4506 -5.9416 1.3257 18 1 -0.4849 0.8401 -0.0004 19 1 0.6238 -2.5567 -0.8903 20 1 0.6245 -2.5571 0.8897 21 1 0.9443 -4.9827 -0.8898 22 1 0.9448 -4.9822 0.8903 23 1 1.8372 -7.7597 -0.9511 24 1 1.1064 -7.3793 0.6443 25 1 3.7233 -8.7284 0.0120 26 1 2.6783 -8.9099 1.4472 27 1 2.7976 -5.6888 2.1610 28 1 4.2740 -5.2302 1.2612 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049690066.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:32 Heat of formation + Delta-G solvation = -107.695232 kcal Electronic energy + Delta-G solvation = -11293.136235 eV Core-core repulsion = 9115.791207 eV Total energy + Delta-G solvation = -2177.345028 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.28119 -36.63304 -33.04856 -32.25120 -29.46013 -27.30052 -24.91825 -22.48846 -21.93866 -20.45137 -16.77454 -16.47590 -15.59676 -15.35417 -15.01055 -14.31287 -14.22170 -13.36246 -13.23207 -12.54463 -11.81274 -11.57086 -11.42634 -11.15206 -10.92254 -10.74714 -10.55316 -10.40463 -10.02054 -9.39895 -9.12728 -8.87588 -8.22516 -6.13821 -4.15684 3.27935 3.34455 3.41016 3.98168 4.30746 4.51986 4.74451 4.97223 5.14961 5.22926 5.39543 5.47967 5.65732 5.72746 5.83466 5.92023 6.04957 6.13029 6.20769 6.42178 7.04881 7.10907 7.38141 7.76757 8.11218 8.52181 8.97628 9.49448 10.97793 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.091061 B = 0.007318 C = 0.006946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 307.413437 B = 3825.475402 C = 4030.347056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.516 4.516 8 H 0.067 0.933 9 C 0.195 3.805 10 O -0.396 6.396 11 C 0.074 3.926 12 C -0.119 4.119 13 H 0.091 0.909 14 C -0.151 4.151 15 C 0.053 3.947 16 O -0.391 6.391 17 C 0.061 3.939 18 H 0.264 0.736 19 H 0.006 0.994 20 H 0.006 0.994 21 H 0.041 0.959 22 H 0.039 0.961 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.744 -12.163 0.272 12.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.121 3.879 10 O -0.316 6.316 11 C -0.003 4.003 12 C -0.137 4.137 13 H 0.110 0.890 14 C -0.189 4.189 15 C -0.024 4.024 16 O -0.311 6.311 17 C -0.015 4.015 18 H 0.073 0.927 19 H 0.023 0.977 20 H 0.024 0.976 21 H 0.059 0.941 22 H 0.058 0.942 23 H 0.100 0.900 24 H 0.096 0.904 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.969 -12.064 0.393 12.430 hybrid contribution -0.304 0.926 -0.179 0.991 sum 2.665 -11.138 0.215 11.454 Atomic orbital electron populations 1.69972 1.06135 1.27108 1.50560 1.24959 0.94987 0.99494 0.95080 0.86269 0.80039 0.82495 0.77637 1.19434 1.20828 1.20807 1.21100 0.94136 0.89307 1.50826 0.91433 1.20224 0.88754 0.83515 0.95456 1.87844 1.35650 1.12871 1.95209 1.22101 0.93658 0.85123 0.99459 1.22871 0.97931 0.93465 0.99465 0.89040 1.23171 0.99047 0.94813 1.01844 1.23054 0.91709 0.92558 0.95041 1.88370 1.52415 1.17259 1.73060 1.23409 0.98567 0.83379 0.96154 0.92671 0.97653 0.97644 0.94068 0.94236 0.89967 0.90375 0.91577 0.91773 0.91976 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.87 13.29 55.43 0.74 -26.14 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 3 Si 0.91 21.82 29.54 -169.99 -5.02 16.80 15 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 5 H -0.28 -6.65 7.11 56.52 0.40 -6.24 15 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 7 C -0.52 -15.20 9.43 -34.44 -0.32 -15.53 15 8 H 0.07 1.98 7.81 -52.48 -0.41 1.57 15 9 C 0.19 5.34 5.69 36.00 0.20 5.55 15 10 O -0.40 -9.50 10.18 -35.23 -0.36 -9.86 15 11 C 0.07 1.37 5.40 37.16 0.20 1.57 15 12 C -0.12 -1.81 3.39 -88.23 -0.30 -2.11 15 13 H 0.09 1.41 8.14 -51.93 -0.42 0.98 15 14 C -0.15 -1.78 6.51 -24.64 -0.16 -1.94 15 15 C 0.05 0.63 7.80 37.88 0.30 0.92 15 16 O -0.39 -6.01 11.36 -35.23 -0.40 -6.41 15 17 C 0.06 0.96 7.12 38.18 0.27 1.23 15 18 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 19 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 15 20 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 15 21 H 0.04 0.73 8.14 -51.93 -0.42 0.30 15 22 H 0.04 0.70 8.10 -51.93 -0.42 0.28 15 23 H 0.08 0.82 8.14 -51.93 -0.42 0.40 15 24 H 0.08 0.87 8.04 -51.93 -0.42 0.45 15 25 H 0.07 0.69 8.14 -51.93 -0.42 0.26 15 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 15 27 H 0.06 0.98 8.00 -51.93 -0.42 0.57 15 28 H 0.09 1.50 8.14 -51.93 -0.42 1.08 15 LS Contribution 241.87 15.07 3.64 3.64 Total: -1.00 -31.10 241.87 -5.49 -36.58 By element: Atomic # 1 Polarization: -1.66 SS G_CDS: -4.18 Total: -5.84 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.78 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.74 Total: -26.14 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.76 Total: -16.27 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -31.10 -5.49 -36.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049690066.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.112 kcal (2) G-P(sol) polarization free energy of solvation -31.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds