Wall clock time and date at job start Mon Mar 30 2020 02:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00624 * 2 1 4 4 H 1.48495 * 109.47296 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46829 * 299.99787 * 3 2 1 6 6 H 1.48493 * 109.46964 * 59.99619 * 3 2 1 7 7 C 1.37885 * 119.99390 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99414 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00272 * 359.97438 * 7 2 1 10 10 O 1.42904 * 109.47469 * 180.02562 * 9 7 2 11 11 C 1.42895 * 114.00229 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46994 * 180.02562 * 11 10 9 13 13 H 1.09003 * 111.01967 * 302.23274 * 12 11 10 14 14 C 1.55566 * 111.22545 * 177.93021 * 12 11 10 15 15 C 1.54383 * 102.27674 * 207.98163 * 14 12 11 16 16 O 1.43235 * 107.58532 * 21.35887 * 15 14 12 17 17 C 1.43645 * 109.97529 * 1.70714 * 16 15 14 18 18 H 0.97003 * 119.99493 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.47264 * 60.00015 * 9 7 2 20 20 H 1.09000 * 109.46995 * 299.99983 * 9 7 2 21 21 H 1.09001 * 109.46805 * 60.00541 * 11 10 9 22 22 H 1.09000 * 109.47133 * 300.00166 * 11 10 9 23 23 H 1.09007 * 110.84061 * 89.78331 * 14 12 11 24 24 H 1.09000 * 110.83713 * 326.18176 * 14 12 11 25 25 H 1.08995 * 109.83335 * 261.84022 * 15 14 12 26 26 H 1.09003 * 109.82742 * 140.86392 * 15 14 12 27 27 H 1.09002 * 110.30923 * 94.49115 * 17 16 15 28 28 H 1.09000 * 110.31166 * 216.56243 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3963 1.2124 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 8 2.1794 -3.5855 -0.0005 11 6 1.5647 -4.8755 0.0000 12 6 2.6476 -5.9563 0.0006 13 1 3.3078 -5.8488 -0.8601 14 6 2.0225 -7.3799 0.0537 15 6 3.1280 -8.1979 0.7551 16 8 3.9566 -7.2777 1.4749 17 6 3.4506 -5.9416 1.3257 18 1 -0.4849 0.8401 -0.0004 19 1 0.6238 -2.5567 -0.8903 20 1 0.6245 -2.5571 0.8897 21 1 0.9443 -4.9827 -0.8898 22 1 0.9448 -4.9822 0.8903 23 1 1.8372 -7.7597 -0.9511 24 1 1.1064 -7.3793 0.6443 25 1 3.7233 -8.7284 0.0120 26 1 2.6783 -8.9099 1.4472 27 1 2.7976 -5.6888 2.1610 28 1 4.2740 -5.2302 1.2612 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049690066.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:32 Heat of formation + Delta-G solvation = -129.182027 kcal Electronic energy + Delta-G solvation = -11294.067972 eV Core-core repulsion = 9115.791207 eV Total energy + Delta-G solvation = -2178.276765 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.45963 -38.42648 -35.05050 -33.73264 -30.64459 -29.32088 -26.44324 -24.51198 -23.09660 -21.70291 -18.69413 -17.93476 -17.23141 -16.85975 -16.48924 -16.22096 -15.59028 -14.94768 -14.45268 -14.14036 -13.62595 -13.14550 -12.95857 -12.69420 -12.52506 -12.31289 -12.07166 -11.81971 -11.66036 -11.27428 -10.89516 -10.50059 -10.27672 -8.34277 -6.46755 1.40056 1.41189 1.56075 2.33290 2.80715 2.99854 3.14962 3.54231 3.82438 4.03979 4.23835 4.32371 4.36228 4.57301 4.60940 4.79422 4.82236 4.89284 4.90913 5.04096 5.14074 5.24137 5.53340 5.93107 6.01233 6.49522 6.78542 7.25367 8.78278 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.091061 B = 0.007318 C = 0.006946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 307.413437 B = 3825.475402 C = 4030.347056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.984 3.016 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.551 4.551 8 H 0.062 0.938 9 C 0.208 3.792 10 O -0.410 6.410 11 C 0.067 3.933 12 C -0.117 4.117 13 H 0.089 0.911 14 C -0.140 4.140 15 C 0.046 3.954 16 O -0.408 6.408 17 C 0.061 3.939 18 H 0.271 0.729 19 H -0.011 1.011 20 H -0.012 1.012 21 H 0.050 0.950 22 H 0.045 0.955 23 H 0.106 0.894 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.057 0.943 28 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.113 -12.520 0.038 12.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.807 3.193 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.588 4.588 8 H 0.080 0.920 9 C 0.133 3.867 10 O -0.330 6.330 11 C -0.010 4.010 12 C -0.135 4.135 13 H 0.108 0.892 14 C -0.177 4.177 15 C -0.030 4.030 16 O -0.328 6.328 17 C -0.015 4.015 18 H 0.080 0.920 19 H 0.006 0.994 20 H 0.006 0.994 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.124 0.876 24 H 0.104 0.896 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.075 0.925 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.333 -12.455 0.158 12.894 hybrid contribution -0.451 0.928 -0.104 1.037 sum 2.882 -11.527 0.054 11.882 Atomic orbital electron populations 1.70069 1.07751 1.28661 1.50443 1.25963 0.95974 1.03400 0.93831 0.85120 0.78642 0.77245 0.78306 1.18862 1.19600 1.19627 1.21432 0.94157 0.90864 1.52354 0.91995 1.19856 0.88607 0.84548 0.93686 1.87802 1.35640 1.14334 1.95250 1.22410 0.95079 0.83391 1.00126 1.22834 0.97160 0.94454 0.99094 0.89216 1.23177 0.99080 0.91961 1.03520 1.23326 0.91712 0.92168 0.95773 1.88350 1.53457 1.17209 1.73821 1.23302 0.98058 0.83824 0.96324 0.91977 0.99366 0.99438 0.93152 0.93680 0.87579 0.89571 0.89786 0.89799 0.92450 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.80 13.29 21.45 0.28 -55.52 15 2 C 0.01 0.40 5.46 84.66 0.46 0.86 15 3 Si 0.98 44.38 29.54 68.60 2.03 46.40 15 4 H -0.26 -11.60 7.11 99.48 0.71 -10.89 15 5 H -0.27 -11.67 7.11 99.48 0.71 -10.96 15 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 7 C -0.55 -32.96 9.43 25.60 0.24 -32.72 15 8 H 0.06 3.68 7.81 -2.91 -0.02 3.66 15 9 C 0.21 11.72 5.69 71.23 0.41 12.13 15 10 O -0.41 -20.04 10.18 -148.98 -1.52 -21.56 15 11 C 0.07 2.44 5.40 71.98 0.39 2.83 15 12 C -0.12 -3.43 3.39 -9.25 -0.03 -3.46 15 13 H 0.09 2.67 8.14 -2.39 -0.02 2.65 15 14 C -0.14 -2.92 6.51 31.95 0.21 -2.71 15 15 C 0.05 0.96 7.80 72.45 0.56 1.53 15 16 O -0.41 -11.98 11.36 -148.98 -1.69 -13.67 15 17 C 0.06 1.91 7.12 72.65 0.52 2.43 15 18 H 0.27 15.01 8.31 -92.71 -0.77 14.24 15 19 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 15 20 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 15 21 H 0.05 1.75 8.14 -2.39 -0.02 1.73 15 22 H 0.04 1.59 8.10 -2.39 -0.02 1.57 15 23 H 0.11 1.74 8.14 -2.38 -0.02 1.72 15 24 H 0.09 1.68 8.04 -2.39 -0.02 1.66 15 25 H 0.08 1.47 8.14 -2.39 -0.02 1.45 15 26 H 0.08 1.45 8.14 -2.39 -0.02 1.43 15 27 H 0.06 1.81 8.00 -2.39 -0.02 1.80 15 28 H 0.08 2.61 8.14 -2.39 -0.02 2.59 15 Total: -1.00 -66.20 241.87 2.97 -63.23 By element: Atomic # 1 Polarization: -0.89 SS G_CDS: 1.11 Total: 0.23 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: 2.76 Total: -19.11 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.28 Total: -55.52 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -3.21 Total: -35.23 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -66.20 2.97 -63.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049690066.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.951 kcal (2) G-P(sol) polarization free energy of solvation -66.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds