Wall clock time and date at job start Mon Mar 30 2020 02:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 O 1.42899 * 109.46876 * 179.72213 * 9 7 2 11 11 C 1.42901 * 113.99607 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46804 * 179.97438 * 11 10 9 13 13 H 1.08997 * 110.74735 * 57.02326 * 12 11 10 14 14 C 1.55309 * 110.84346 * 180.71058 * 12 11 10 15 15 C 1.54951 * 100.93793 * 152.32608 * 14 12 11 16 16 O 1.43649 * 105.13687 * 323.55938 * 15 14 12 17 17 C 1.43241 * 109.97099 * 24.42435 * 16 15 14 18 18 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.08995 * 109.47224 * 300.00085 * 11 10 9 22 22 H 1.09001 * 109.47248 * 60.00362 * 11 10 9 23 23 H 1.08990 * 111.12840 * 270.24431 * 14 12 11 24 24 H 1.08996 * 111.12467 * 34.41782 * 14 12 11 25 25 H 1.08993 * 110.31011 * 204.64170 * 15 14 12 26 26 H 1.09001 * 110.39216 * 82.51561 * 15 14 12 27 27 H 1.08997 * 109.82750 * 238.77532 * 17 16 15 28 28 H 1.09005 * 109.90200 * 117.84365 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 8 3.9878 -2.5414 0.0104 11 6 5.4124 -2.6542 0.0160 12 6 5.8068 -4.1325 0.0213 13 1 5.3735 -4.6508 -0.8340 14 6 7.3515 -4.2922 0.0455 15 6 7.4943 -5.6631 0.7536 16 8 6.4466 -5.6888 1.7360 17 6 5.3867 -4.8085 1.3440 18 1 -0.4849 0.8400 0.0004 19 1 3.8786 -0.6821 -0.8838 20 1 3.8711 -0.6785 0.8962 21 1 5.8185 -2.1726 -0.8734 22 1 5.8118 -2.1688 0.9065 23 1 7.7586 -4.3277 -0.9649 24 1 7.8194 -3.4987 0.6281 25 1 8.4682 -5.7396 1.2369 26 1 7.3626 -6.4753 0.0387 27 1 5.2311 -4.0519 2.1130 28 1 4.4688 -5.3770 1.1935 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049690067.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:33 Heat of formation + Delta-G solvation = -102.251440 kcal Electronic energy + Delta-G solvation = -11339.303020 eV Core-core repulsion = 9162.194053 eV Total energy + Delta-G solvation = -2177.108967 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.36591 -36.83378 -33.04103 -32.30338 -29.57567 -27.94128 -25.03497 -22.40066 -21.75298 -20.46830 -17.02552 -16.70476 -15.87313 -15.38703 -14.90944 -14.58263 -14.30957 -13.33819 -13.13037 -12.57338 -12.27965 -11.84321 -11.52658 -11.26509 -10.97542 -10.82352 -10.60743 -10.44737 -9.89432 -9.41527 -9.22521 -8.90975 -8.52479 -6.14549 -4.14078 3.22295 3.29478 3.30565 3.94259 4.30946 4.33416 4.62115 4.93670 5.08802 5.16696 5.30605 5.38976 5.54752 5.65058 5.72536 5.86730 5.90265 6.01795 6.16754 6.34003 6.54618 6.94659 7.07153 7.55253 7.95238 8.61542 8.96412 9.44280 10.98447 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.083802 B = 0.007887 C = 0.007485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 334.039454 B = 3549.327061 C = 3739.742867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.083 0.917 9 C 0.169 3.831 10 O -0.381 6.381 11 C 0.069 3.931 12 C -0.118 4.118 13 H 0.091 0.909 14 C -0.151 4.151 15 C 0.053 3.947 16 O -0.391 6.391 17 C 0.060 3.940 18 H 0.267 0.733 19 H -0.001 1.001 20 H 0.004 0.996 21 H 0.043 0.957 22 H 0.042 0.958 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.540 -5.918 -0.069 15.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.559 4.559 8 H 0.101 0.899 9 C 0.094 3.906 10 O -0.300 6.300 11 C -0.009 4.009 12 C -0.137 4.137 13 H 0.110 0.890 14 C -0.188 4.188 15 C -0.024 4.024 16 O -0.311 6.311 17 C -0.017 4.017 18 H 0.077 0.923 19 H 0.017 0.983 20 H 0.021 0.979 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.102 0.898 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 14.234 -6.070 0.122 15.475 hybrid contribution 0.504 1.368 -0.290 1.487 sum 14.738 -4.702 -0.168 15.471 Atomic orbital electron populations 1.69873 1.06065 1.27147 1.50179 1.24770 0.94812 0.98768 0.94581 0.86845 0.80344 0.83741 0.78779 1.19905 1.20712 1.19118 1.20889 0.88207 0.95379 1.51416 0.89920 1.20617 0.96239 0.79331 0.94420 1.87905 1.17271 1.29759 1.95066 1.22253 0.85108 0.93972 0.99546 1.22697 0.94731 0.96913 0.99375 0.89014 1.23267 0.95585 0.98112 1.01882 1.23310 0.91602 0.96332 0.91149 1.88378 1.30331 1.66055 1.46298 1.23170 0.90120 0.92730 0.95631 0.92306 0.98336 0.97863 0.93922 0.94016 0.89822 0.90221 0.90037 0.92332 0.90731 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.60 13.96 55.43 0.77 -26.82 15 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 15 3 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 15 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 6 H -0.27 -6.21 6.54 56.52 0.37 -5.84 15 7 C -0.52 -15.52 9.99 -34.44 -0.34 -15.86 15 8 H 0.08 2.69 8.06 -52.49 -0.42 2.27 15 9 C 0.17 4.29 4.76 36.01 0.17 4.46 15 10 O -0.38 -8.79 10.17 -35.23 -0.36 -9.15 15 11 C 0.07 1.19 5.25 37.16 0.20 1.39 15 12 C -0.12 -1.72 3.29 -88.67 -0.29 -2.01 15 13 H 0.09 1.33 8.14 -51.93 -0.42 0.90 15 14 C -0.15 -1.67 6.62 -24.48 -0.16 -1.83 15 15 C 0.05 0.59 7.78 38.19 0.30 0.89 15 16 O -0.39 -5.86 11.36 -35.23 -0.40 -6.26 15 17 C 0.06 0.92 7.26 37.88 0.27 1.20 15 18 H 0.27 7.61 8.31 -40.82 -0.34 7.27 15 19 H 0.00 -0.03 7.58 -51.93 -0.39 -0.42 15 20 H 0.00 0.09 7.19 -51.93 -0.37 -0.28 15 21 H 0.04 0.69 8.14 -51.93 -0.42 0.26 15 22 H 0.04 0.69 8.07 -51.93 -0.42 0.27 15 23 H 0.08 0.77 8.14 -51.93 -0.42 0.34 15 24 H 0.08 0.85 8.04 -51.93 -0.42 0.43 15 25 H 0.08 0.76 8.14 -51.93 -0.42 0.33 15 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 15 27 H 0.07 1.21 7.76 -51.93 -0.40 0.80 15 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 15 LS Contribution 237.97 15.07 3.59 3.59 Total: -1.00 -31.69 237.97 -5.16 -36.84 By element: Atomic # 1 Polarization: -1.00 SS G_CDS: -4.13 Total: -5.13 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 0.04 Total: -9.73 kcal Atomic # 7 Polarization: -27.60 SS G_CDS: 0.77 Total: -26.82 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.76 Total: -15.41 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -31.69 -5.16 -36.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049690067.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.407 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds