Wall clock time and date at job start Mon Mar 30 2020 02:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 O 1.42899 * 109.46876 * 179.72213 * 9 7 2 11 11 C 1.42901 * 113.99607 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46804 * 179.97438 * 11 10 9 13 13 H 1.08997 * 110.74735 * 57.02326 * 12 11 10 14 14 C 1.55309 * 110.84346 * 180.71058 * 12 11 10 15 15 C 1.54951 * 100.93793 * 152.32608 * 14 12 11 16 16 O 1.43649 * 105.13687 * 323.55938 * 15 14 12 17 17 C 1.43241 * 109.97099 * 24.42435 * 16 15 14 18 18 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.08995 * 109.47224 * 300.00085 * 11 10 9 22 22 H 1.09001 * 109.47248 * 60.00362 * 11 10 9 23 23 H 1.08990 * 111.12840 * 270.24431 * 14 12 11 24 24 H 1.08996 * 111.12467 * 34.41782 * 14 12 11 25 25 H 1.08993 * 110.31011 * 204.64170 * 15 14 12 26 26 H 1.09001 * 110.39216 * 82.51561 * 15 14 12 27 27 H 1.08997 * 109.82750 * 238.77532 * 17 16 15 28 28 H 1.09005 * 109.90200 * 117.84365 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 8 3.9878 -2.5414 0.0104 11 6 5.4124 -2.6542 0.0160 12 6 5.8068 -4.1325 0.0213 13 1 5.3735 -4.6508 -0.8340 14 6 7.3515 -4.2922 0.0455 15 6 7.4943 -5.6631 0.7536 16 8 6.4466 -5.6888 1.7360 17 6 5.3867 -4.8085 1.3440 18 1 -0.4849 0.8400 0.0004 19 1 3.8786 -0.6821 -0.8838 20 1 3.8711 -0.6785 0.8962 21 1 5.8185 -2.1726 -0.8734 22 1 5.8118 -2.1688 0.9065 23 1 7.7586 -4.3277 -0.9649 24 1 7.8194 -3.4987 0.6281 25 1 8.4682 -5.7396 1.2369 26 1 7.3626 -6.4753 0.0387 27 1 5.2311 -4.0519 2.1130 28 1 4.4688 -5.3770 1.1935 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049690067.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:33 Heat of formation + Delta-G solvation = -125.348780 kcal Electronic energy + Delta-G solvation = -11340.304596 eV Core-core repulsion = 9162.194053 eV Total energy + Delta-G solvation = -2178.110543 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.48889 -38.49708 -34.99170 -33.78918 -30.80860 -29.80243 -26.43372 -24.05075 -23.14798 -21.65601 -19.10261 -17.92554 -17.33606 -16.88233 -16.37956 -16.31390 -15.65638 -14.88786 -14.45304 -14.22338 -13.85276 -13.31195 -13.04205 -12.66410 -12.48571 -12.09282 -11.98092 -11.81841 -11.70069 -11.36234 -10.94068 -10.51489 -10.40020 -8.39036 -6.47732 1.32767 1.36175 1.46960 2.28314 2.81747 2.93611 3.03309 3.52603 3.85849 3.99420 4.24597 4.33618 4.36245 4.48310 4.61210 4.66065 4.80446 4.89067 4.92645 4.98006 5.01163 5.23676 5.40817 5.89961 6.02381 6.56409 6.70154 7.16867 8.78190 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.083802 B = 0.007887 C = 0.007485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 334.039454 B = 3549.327061 C = 3739.742867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.013 3.987 3 Si 0.958 3.042 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.245 1.245 7 C -0.550 4.550 8 H 0.029 0.971 9 C 0.179 3.821 10 O -0.408 6.408 11 C 0.061 3.939 12 C -0.118 4.118 13 H 0.089 0.911 14 C -0.138 4.138 15 C 0.044 3.956 16 O -0.410 6.410 17 C 0.059 3.941 18 H 0.274 0.726 19 H 0.015 0.985 20 H 0.013 0.987 21 H 0.062 0.938 22 H 0.052 0.948 23 H 0.110 0.890 24 H 0.088 0.912 25 H 0.106 0.894 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.334 -4.746 -0.487 17.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.185 4.185 3 Si 0.778 3.222 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.168 1.168 7 C -0.587 4.587 8 H 0.048 0.952 9 C 0.103 3.897 10 O -0.328 6.328 11 C -0.015 4.015 12 C -0.137 4.137 13 H 0.108 0.892 14 C -0.175 4.175 15 C -0.031 4.031 16 O -0.330 6.330 17 C -0.017 4.017 18 H 0.083 0.917 19 H 0.032 0.968 20 H 0.031 0.969 21 H 0.080 0.920 22 H 0.070 0.930 23 H 0.128 0.872 24 H 0.106 0.894 25 H 0.124 0.876 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.050 -4.929 -0.299 17.751 hybrid contribution -0.391 0.861 -0.154 0.958 sum 16.660 -4.068 -0.453 17.155 Atomic orbital electron populations 1.70034 1.08332 1.28871 1.50912 1.25873 0.95819 1.03518 0.93339 0.85580 0.79417 0.77293 0.79875 1.18206 1.19862 1.16809 1.21183 0.91031 0.93881 1.52630 0.95246 1.20338 0.93253 0.80815 0.95261 1.87863 1.21162 1.28498 1.95295 1.22587 0.81900 0.96176 1.00885 1.22702 0.97580 0.94880 0.98517 0.89247 1.23270 0.92444 0.98156 1.03640 1.23613 0.91526 0.96915 0.91062 1.88358 1.30969 1.65891 1.47753 1.23055 0.90206 0.92495 0.95973 0.91734 0.96758 0.96937 0.91991 0.92993 0.87173 0.89364 0.87636 0.91097 0.92036 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.48 13.96 21.45 0.30 -59.18 15 2 C 0.01 0.74 5.47 84.66 0.46 1.21 15 3 Si 0.96 43.04 27.47 68.60 1.88 44.92 15 4 H -0.26 -10.90 7.11 99.48 0.71 -10.20 15 5 H -0.27 -11.87 7.11 99.48 0.71 -11.16 15 6 H -0.24 -10.08 6.54 99.48 0.65 -9.43 15 7 C -0.55 -33.65 9.99 25.60 0.26 -33.39 15 8 H 0.03 2.03 8.06 -2.91 -0.02 2.01 15 9 C 0.18 8.94 4.76 71.24 0.34 9.28 15 10 O -0.41 -18.84 10.17 -148.98 -1.52 -20.35 15 11 C 0.06 2.00 5.25 71.98 0.38 2.38 15 12 C -0.12 -3.24 3.29 -9.53 -0.03 -3.27 15 13 H 0.09 2.48 8.14 -2.39 -0.02 2.46 15 14 C -0.14 -2.58 6.62 32.05 0.21 -2.37 15 15 C 0.04 0.87 7.78 72.65 0.57 1.44 15 16 O -0.41 -11.79 11.36 -148.98 -1.69 -13.48 15 17 C 0.06 1.83 7.26 72.45 0.53 2.35 15 18 H 0.27 15.80 8.31 -92.71 -0.77 15.03 15 19 H 0.01 0.68 7.58 -2.38 -0.02 0.67 15 20 H 0.01 0.62 7.19 -2.39 -0.02 0.60 15 21 H 0.06 1.80 8.14 -2.39 -0.02 1.78 15 22 H 0.05 1.60 8.07 -2.39 -0.02 1.58 15 23 H 0.11 1.52 8.14 -2.39 -0.02 1.50 15 24 H 0.09 1.54 8.04 -2.39 -0.02 1.52 15 25 H 0.11 1.58 8.14 -2.39 -0.02 1.56 15 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 15 27 H 0.06 2.02 7.76 -2.39 -0.02 2.00 15 28 H 0.06 1.94 8.14 -2.38 -0.02 1.92 15 Total: -1.00 -70.18 237.97 2.75 -67.43 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: 1.06 Total: 3.03 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: 2.71 Total: -22.38 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: 0.30 Total: -59.18 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -3.21 Total: -33.83 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.88 Total: 44.92 kcal Total: -70.18 2.75 -67.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049690067.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.917 kcal (2) G-P(sol) polarization free energy of solvation -70.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds