Wall clock time and date at job start Mon Mar 30 2020 02:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.50696 * 109.47238 * 179.97438 * 3 2 1 5 5 H 1.08003 * 119.99953 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00530 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99491 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00192 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47104 * 90.00469 * 8 6 4 10 10 H 1.48504 * 109.47118 * 210.00220 * 8 6 4 11 11 H 1.48499 * 109.47293 * 330.00224 * 8 6 4 12 12 O 1.42957 * 109.47042 * 239.99797 * 2 1 3 13 13 C 1.43092 * 113.77318 * 298.79838 * 12 2 1 14 14 C 1.53265 * 108.93966 * 302.03040 * 13 12 2 15 15 C 1.53255 * 108.84444 * 54.52351 * 14 13 12 16 16 O 1.42969 * 109.46668 * 119.99838 * 2 1 3 17 17 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 18 18 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 19 19 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 20 20 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 21 21 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 22 22 H 0.97006 * 119.99590 * 179.97438 * 7 6 4 23 23 H 1.09006 * 109.55712 * 182.19407 * 13 12 2 24 24 H 1.09000 * 109.64771 * 61.91973 * 13 12 2 25 25 H 1.09005 * 109.57251 * 294.71413 * 14 13 12 26 26 H 1.08998 * 109.67680 * 174.40075 * 14 13 12 27 27 H 1.08999 * 109.55538 * 185.63407 * 15 14 13 28 28 H 1.08996 * 109.64552 * 65.37005 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 1 4.0870 0.5072 0.0006 6 6 4.2365 2.6365 0.0002 7 7 3.5789 3.7754 -0.0002 8 14 6.1045 2.6364 0.0003 9 1 6.5996 2.6360 -1.3998 10 1 6.5995 3.8491 0.6999 11 1 6.5995 1.4241 0.7007 12 8 2.0066 -0.6739 -1.1672 13 6 1.6041 -2.0448 -1.2465 14 6 2.1043 -2.7830 0.0001 15 6 1.6040 -2.0448 1.2465 16 8 2.0065 -0.6739 1.1674 17 1 -0.3633 0.5139 -0.8900 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 1.6767 1.9563 -0.8900 21 1 1.6767 1.9563 0.8900 22 1 4.0640 4.6155 -0.0002 23 1 2.0350 -2.5007 -2.1380 24 1 0.5168 -2.1054 -1.2947 25 1 3.1941 -2.8027 0.0001 26 1 1.7206 -3.8032 0.0012 27 1 2.0348 -2.5007 2.1380 28 1 0.5168 -2.1037 1.2956 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049804612.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:33 Heat of formation + Delta-G solvation = -102.116707 kcal Electronic energy + Delta-G solvation = -12147.984409 eV Core-core repulsion = 9970.881284 eV Total energy + Delta-G solvation = -2177.103125 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.54887 -34.87180 -33.57663 -32.00081 -29.75339 -27.52373 -25.41827 -23.49089 -21.43186 -19.15744 -16.86288 -16.31977 -15.68740 -14.89287 -14.24550 -14.24431 -14.03197 -12.77501 -12.67429 -12.03604 -11.86732 -11.50698 -11.25914 -11.03506 -10.97182 -10.63382 -10.41213 -10.32257 -9.43970 -9.34782 -9.21095 -8.60965 -8.26024 -5.87885 -3.84886 3.42967 3.47680 3.53798 4.38104 4.51330 4.59251 5.08862 5.12776 5.37804 5.49707 5.50409 5.67848 5.69669 5.74817 5.97643 6.02638 6.14142 6.31621 6.51995 6.78793 7.50403 7.53515 7.72841 8.11937 8.19438 8.52583 9.18459 9.75596 11.24569 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.052559 B = 0.013088 C = 0.011960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.611040 B = 2138.820056 C = 2340.508610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.274 3.726 3 C 0.043 3.957 4 C -0.489 4.489 5 H 0.062 0.938 6 C 0.050 3.950 7 N -0.905 5.905 8 Si 0.895 3.105 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 O -0.367 6.367 13 C 0.050 3.950 14 C -0.189 4.189 15 C 0.050 3.950 16 O -0.367 6.367 17 H 0.071 0.929 18 H 0.050 0.950 19 H 0.071 0.929 20 H 0.039 0.961 21 H 0.039 0.961 22 H 0.259 0.741 23 H 0.087 0.913 24 H 0.044 0.956 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.343 -10.692 0.003 11.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.198 3.802 3 C 0.007 3.993 4 C -0.527 4.527 5 H 0.080 0.920 6 C -0.150 4.150 7 N -0.546 5.546 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.199 1.199 12 O -0.287 6.287 13 C -0.027 4.027 14 C -0.227 4.227 15 C -0.027 4.027 16 O -0.287 6.287 17 H 0.090 0.910 18 H 0.069 0.931 19 H 0.090 0.910 20 H 0.057 0.943 21 H 0.057 0.943 22 H 0.068 0.932 23 H 0.105 0.895 24 H 0.063 0.937 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.087 -10.308 0.009 11.495 hybrid contribution 0.630 -0.349 -0.011 0.720 sum -4.457 -10.657 -0.002 11.552 Atomic orbital electron populations 1.22881 0.98258 1.01433 1.03537 1.23341 0.88917 0.93396 0.74523 1.19132 0.97535 0.84167 0.98491 1.21046 0.90832 0.92502 1.48342 0.91994 1.24992 0.98456 0.95612 0.95910 1.69954 1.35265 0.97153 1.52216 0.86533 0.85928 0.77257 0.77916 1.20841 1.21442 1.19944 1.88345 1.75609 1.21220 1.43502 1.22526 0.98144 0.84444 0.97599 1.22740 1.03142 0.99506 0.97337 1.22527 0.98140 0.84455 0.97607 1.88349 1.75624 1.21216 1.43486 0.91009 0.93137 0.91014 0.94322 0.94312 0.93171 0.89485 0.93742 0.90261 0.91044 0.89494 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.68 8.11 37.16 0.30 -3.37 15 2 C 0.27 6.19 1.04 -26.73 -0.03 6.16 15 3 C 0.04 1.18 4.46 -27.89 -0.12 1.05 15 4 C -0.49 -14.62 8.44 -34.44 -0.29 -14.91 15 5 H 0.06 1.89 7.65 -52.48 -0.40 1.48 15 6 C 0.05 1.48 5.46 -17.82 -0.10 1.39 15 7 N -0.90 -27.91 13.29 55.43 0.74 -27.17 15 8 Si 0.90 22.84 29.54 -169.99 -5.02 17.81 15 9 H -0.28 -7.08 7.11 56.52 0.40 -6.68 15 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 15 11 H -0.27 -6.92 7.11 56.52 0.40 -6.52 15 12 O -0.37 -8.20 9.94 -59.03 -0.59 -8.78 15 13 C 0.05 0.83 6.59 37.29 0.25 1.07 15 14 C -0.19 -2.86 6.35 -26.46 -0.17 -3.02 15 15 C 0.05 0.83 6.59 37.29 0.25 1.07 15 16 O -0.37 -8.21 9.94 -59.03 -0.59 -8.79 15 17 H 0.07 1.25 8.14 -51.93 -0.42 0.82 15 18 H 0.05 0.78 5.12 -51.93 -0.27 0.51 15 19 H 0.07 1.25 8.14 -51.93 -0.42 0.82 15 20 H 0.04 1.09 8.14 -51.93 -0.42 0.67 15 21 H 0.04 1.10 8.14 -51.93 -0.42 0.67 15 22 H 0.26 7.53 8.31 -40.82 -0.34 7.19 15 23 H 0.09 1.26 8.14 -51.93 -0.42 0.84 15 24 H 0.04 0.65 6.54 -51.93 -0.34 0.31 15 25 H 0.08 1.29 8.14 -51.93 -0.42 0.87 15 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15 27 H 0.09 1.26 8.14 -51.93 -0.42 0.84 15 28 H 0.04 0.65 6.53 -51.93 -0.34 0.31 15 LS Contribution 230.35 15.07 3.47 3.47 Total: -1.00 -32.52 230.35 -5.76 -38.29 By element: Atomic # 1 Polarization: -0.40 SS G_CDS: -3.86 Total: -4.26 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 0.08 Total: -10.56 kcal Atomic # 7 Polarization: -27.91 SS G_CDS: 0.74 Total: -27.17 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -1.17 Total: -17.58 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -32.52 -5.76 -38.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049804612.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.831 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds